Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EYC56_RS17945 Genome accession   NZ_CP036255
Coordinates   3818330..3818767 (-) Length   145 a.a.
NCBI ID   WP_131085167.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BB151-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3813330..3823767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC56_RS17925 (EYC56_17925) pilR 3814102..3815496 (+) 1395 WP_131085161.1 sigma-54 dependent transcriptional regulator Regulator
  EYC56_RS17930 (EYC56_17930) - 3815493..3816014 (+) 522 WP_207306597.1 Fic family protein -
  EYC56_RS17935 (EYC56_17935) pilB 3816023..3817756 (-) 1734 WP_131085163.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYC56_RS17940 (EYC56_17940) pilA 3817819..3818253 (-) 435 WP_131085165.1 pilin Machinery gene
  EYC56_RS17945 (EYC56_17945) pilE 3818330..3818767 (-) 438 WP_131085167.1 pilin Machinery gene
  EYC56_RS17950 (EYC56_17950) pilC 3819094..3820350 (+) 1257 WP_131085169.1 type II secretion system F family protein Machinery gene
  EYC56_RS17955 (EYC56_17955) - 3820357..3821220 (+) 864 WP_131077923.1 A24 family peptidase -
  EYC56_RS17960 (EYC56_17960) coaE 3821234..3821845 (+) 612 WP_131085171.1 dephospho-CoA kinase -
  EYC56_RS17965 (EYC56_17965) - 3821840..3822871 (-) 1032 WP_131085173.1 IS630 family transposase -
  EYC56_RS17970 (EYC56_17970) - 3823111..3823620 (-) 510 Protein_3263 transposase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 14989.12 Da        Isoelectric Point: 9.0011

>NTDB_id=347711 EYC56_RS17945 WP_131085167.1 3818330..3818767(-) (pilE) [Xanthomonas oryzae strain BB151-3]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNTAAGLEAAANIKG
KYITSVTVSSGGVITALFNNSNAKLSGKNLVLTPTDNNGSISWGCTKDTTIDQKYLPTSCRTATP

Nucleotide


Download         Length: 438 bp        

>NTDB_id=347711 EYC56_RS17945 WP_131085167.1 3818330..3818767(-) (pilE) [Xanthomonas oryzae strain BB151-3]
ATGAAGAAGCAAAACGGTTTTACTTTGATCGAACTCATGATCGTGGTCGCGATCATTGCTATCCTGGCTGCTATCGCTCT
GCCGGCTTATCAGGACTACCTCGCGCGTTCGCAGGTCTCTGAAGGTCTGTCGCTGGCGTCGGGTGCAAAGACCGCCGTTG
CTGAGACGTATGCGAACACTGGCGCATTCCCGGCCAACAACACAGCTGCTGGTCTTGAGGCTGCGGCAAACATCAAGGGT
AAGTACATCACCTCGGTGACCGTTAGCTCTGGTGGCGTCATAACTGCGCTGTTTAATAACTCCAATGCGAAGCTGAGTGG
TAAGAACCTTGTCCTGACTCCGACGGACAACAACGGTTCGATCAGCTGGGGTTGCACCAAGGACACCACCATCGATCAGA
AGTATCTGCCTACCTCTTGCCGTACTGCTACCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.032

100

0.524
  pilE Neisseria gonorrhoeae strain FA1090

47.742

100

0.51
  comP Acinetobacter baylyi ADP1

46.667

100

0.483
  pilA2 Legionella pneumophila str. Paris

49.286

96.552

0.476
  pilA2 Legionella pneumophila strain ERS1305867

48.571

96.552

0.469
  pilA/pilA1 Eikenella corrodens VA1

44.444

100

0.469
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.079

100

0.462
  pilA Acinetobacter baumannii strain A118

42.568

100

0.434
  pilA Pseudomonas aeruginosa PAK

40.789

100

0.428
  pilA Ralstonia pseudosolanacearum GMI1000

37.195

100

0.421
  pilA Vibrio campbellii strain DS40M4

39.597

100

0.407
  pilA Vibrio cholerae strain A1552

38.095

100

0.386
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.095

100

0.386
  pilA Vibrio cholerae C6706

38.095

100

0.386
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.568

95.862

0.379

Multiple sequence alignment