Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EYC56_RS17925 Genome accession   NZ_CP036255
Coordinates   3814102..3815496 (+) Length   464 a.a.
NCBI ID   WP_131085161.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BB151-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3809102..3820496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC56_RS17905 (EYC56_17905) - 3809238..3809444 (-) 207 WP_131085157.1 hypothetical protein -
  EYC56_RS17910 (EYC56_17910) sucD 3809855..3810730 (-) 876 WP_019300808.1 succinate--CoA ligase subunit alpha -
  EYC56_RS17915 (EYC56_17915) sucC 3810755..3811924 (-) 1170 WP_019300809.1 ADP-forming succinate--CoA ligase subunit beta -
  EYC56_RS17920 (EYC56_17920) - 3812158..3813771 (+) 1614 WP_131085159.1 HAMP domain-containing sensor histidine kinase -
  EYC56_RS17925 (EYC56_17925) pilR 3814102..3815496 (+) 1395 WP_131085161.1 sigma-54 dependent transcriptional regulator Regulator
  EYC56_RS17930 (EYC56_17930) - 3815493..3816014 (+) 522 WP_207306597.1 Fic family protein -
  EYC56_RS17935 (EYC56_17935) pilB 3816023..3817756 (-) 1734 WP_131085163.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYC56_RS17940 (EYC56_17940) pilA 3817819..3818253 (-) 435 WP_131085165.1 pilin Machinery gene
  EYC56_RS17945 (EYC56_17945) pilE 3818330..3818767 (-) 438 WP_131085167.1 pilin Machinery gene
  EYC56_RS17950 (EYC56_17950) pilC 3819094..3820350 (+) 1257 WP_131085169.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50187.57 Da        Isoelectric Point: 6.3800

>NTDB_id=347708 EYC56_RS17925 WP_131085161.1 3814102..3815496(+) (pilR) [Xanthomonas oryzae strain BB151-3]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=347708 EYC56_RS17925 WP_131085161.1 3814102..3815496(+) (pilR) [Xanthomonas oryzae strain BB151-3]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAATACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGC
CACCGGAACAAGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment