Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GII78_RS08065 Genome accession   NZ_CP045824
Coordinates   1546531..1546980 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain MB8_B10     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541531..1551980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS08025 (GII78_08025) ctaE 1541547..1542170 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  GII78_RS08030 (GII78_08030) ctaF 1542173..1542505 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  GII78_RS08035 (GII78_08035) ctaG 1542533..1543426 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  GII78_RS08040 (GII78_08040) ylbA 1543458..1543820 (-) 363 WP_003232238.1 YugN family protein -
  GII78_RS08045 (GII78_08045) ylbB 1543960..1544406 (+) 447 WP_029726520.1 CBS domain-containing protein -
  GII78_RS08050 (GII78_08050) ylbC 1544490..1545530 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  GII78_RS08055 (GII78_08055) ylbD 1545762..1546160 (+) 399 WP_003232233.1 YlbD family protein -
  GII78_RS08060 (GII78_08060) ylbE 1546176..1546415 (+) 240 WP_003232231.1 YlbE-like family protein -
  GII78_RS08065 (GII78_08065) ylbF 1546531..1546980 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GII78_RS08070 (GII78_08070) ylbG 1547035..1547307 (+) 273 WP_024573211.1 YlbG family protein -
  GII78_RS08075 (GII78_08075) rsmD 1547630..1548184 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GII78_RS08080 (GII78_08080) coaD 1548189..1548674 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GII78_RS08085 (GII78_08085) spoVV 1548685..1549911 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  GII78_RS08090 (GII78_08090) ylbK 1550092..1550874 (+) 783 WP_003232221.1 patatin family protein -
  GII78_RS08095 (GII78_08095) sepM 1550876..1551901 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=347708 GII78_RS08065 WP_003221370.1 1546531..1546980(+) (ylbF) [Bacillus subtilis strain MB8_B10]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=347708 GII78_RS08065 WP_003221370.1 1546531..1546980(+) (ylbF) [Bacillus subtilis strain MB8_B10]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment