Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EYC56_RS17940 Genome accession   NZ_CP036255
Coordinates   3817819..3818253 (-) Length   144 a.a.
NCBI ID   WP_131085165.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BB151-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3812819..3823253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC56_RS17925 (EYC56_17925) pilR 3814102..3815496 (+) 1395 WP_131085161.1 sigma-54 dependent transcriptional regulator Regulator
  EYC56_RS17930 (EYC56_17930) - 3815493..3816014 (+) 522 WP_207306597.1 Fic family protein -
  EYC56_RS17935 (EYC56_17935) pilB 3816023..3817756 (-) 1734 WP_131085163.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYC56_RS17940 (EYC56_17940) pilA 3817819..3818253 (-) 435 WP_131085165.1 pilin Machinery gene
  EYC56_RS17945 (EYC56_17945) pilE 3818330..3818767 (-) 438 WP_131085167.1 pilin Machinery gene
  EYC56_RS17950 (EYC56_17950) pilC 3819094..3820350 (+) 1257 WP_131085169.1 type II secretion system F family protein Machinery gene
  EYC56_RS17955 (EYC56_17955) - 3820357..3821220 (+) 864 WP_131077923.1 A24 family peptidase -
  EYC56_RS17960 (EYC56_17960) coaE 3821234..3821845 (+) 612 WP_131085171.1 dephospho-CoA kinase -
  EYC56_RS17965 (EYC56_17965) - 3821840..3822871 (-) 1032 WP_131085173.1 IS630 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14925.22 Da        Isoelectric Point: 9.0802

>NTDB_id=347710 EYC56_RS17940 WP_131085165.1 3817819..3818253(-) (pilA) [Xanthomonas oryzae strain BB151-3]
MKARGFTLIELMIVVAIIAILAAIALPAYQDYLVRAQVAEGLSLASGAKVAVEEFHWAQSVSPTSNAQAGLGSADSIKGR
YVSSVTVGVGGIITVAFATLGANESIRGSQLQLVPDWSSAGSTVWRCNGAGTTLQAKYLPKACR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=347710 EYC56_RS17940 WP_131085165.1 3817819..3818253(-) (pilA) [Xanthomonas oryzae strain BB151-3]
GTGAAAGCACGCGGATTCACTTTGATTGAGTTGATGATTGTAGTTGCGATCATTGCAATTCTTGCTGCAATTGCATTGCC
CGCGTATCAGGATTACTTGGTGAGAGCTCAGGTGGCGGAAGGGTTAAGTCTTGCCTCAGGTGCCAAGGTGGCAGTAGAGG
AGTTCCACTGGGCCCAAAGCGTCTCACCGACATCAAATGCTCAGGCTGGATTGGGTAGCGCTGATAGCATAAAAGGTAGA
TATGTTTCGTCTGTTACCGTTGGTGTGGGTGGCATCATAACTGTTGCGTTCGCTACTCTAGGCGCGAACGAATCTATTCG
AGGGTCGCAGTTGCAGTTGGTGCCTGACTGGTCTAGCGCAGGCTCGACAGTGTGGCGTTGCAATGGAGCCGGCACGACGC
TTCAGGCAAAATATCTACCTAAAGCTTGCAGATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)

Pilin (bacterial filament) (Pilin)

(34-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

42.604

100

0.5
  pilE Neisseria gonorrhoeae strain FA1090

43.312

100

0.472
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.17

100

0.472
  pilE Neisseria gonorrhoeae MS11

42.405

100

0.465
  comP Acinetobacter baylyi ADP1

41.772

100

0.458
  pilA2 Legionella pneumophila strain ERS1305867

44.444

100

0.444
  pilA2 Legionella pneumophila str. Paris

44.444

100

0.444
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.136

100

0.41
  pilA/pilA1 Eikenella corrodens VA1

37.748

100

0.396
  pilA Pseudomonas aeruginosa PAK

34.591

100

0.382
  pilA Acinetobacter baumannii strain A118

37.5

100

0.375

Multiple sequence alignment