Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   EYC56_RS17935 Genome accession   NZ_CP036255
Coordinates   3816023..3817756 (-) Length   577 a.a.
NCBI ID   WP_131085163.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BB151-3     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3811023..3822756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC56_RS17920 (EYC56_17920) - 3812158..3813771 (+) 1614 WP_131085159.1 HAMP domain-containing sensor histidine kinase -
  EYC56_RS17925 (EYC56_17925) pilR 3814102..3815496 (+) 1395 WP_131085161.1 sigma-54 dependent transcriptional regulator Regulator
  EYC56_RS17930 (EYC56_17930) - 3815493..3816014 (+) 522 WP_207306597.1 Fic family protein -
  EYC56_RS17935 (EYC56_17935) pilB 3816023..3817756 (-) 1734 WP_131085163.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYC56_RS17940 (EYC56_17940) pilA 3817819..3818253 (-) 435 WP_131085165.1 pilin Machinery gene
  EYC56_RS17945 (EYC56_17945) pilE 3818330..3818767 (-) 438 WP_131085167.1 pilin Machinery gene
  EYC56_RS17950 (EYC56_17950) pilC 3819094..3820350 (+) 1257 WP_131085169.1 type II secretion system F family protein Machinery gene
  EYC56_RS17955 (EYC56_17955) - 3820357..3821220 (+) 864 WP_131077923.1 A24 family peptidase -
  EYC56_RS17960 (EYC56_17960) coaE 3821234..3821845 (+) 612 WP_131085171.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62747.87 Da        Isoelectric Point: 5.6058

>NTDB_id=347709 EYC56_RS17935 WP_131085163.1 3816023..3817756(-) (pilB) [Xanthomonas oryzae strain BB151-3]
MSVLSTANLVGITGIARRLVQDGALEESAARSAMDQAALAKVPLPQWFSEKKLVAASQLAAANAVEFGMPLLDVSAFDAS
QNAVKLVSEELLQKYHVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQANNASLGSSLG
DDDEGMGDLDVSTGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLSQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQK
LFLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
EHALLAEGFTPEQVANMELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMK
ASQGVTSLAEINRVTKD

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=347709 EYC56_RS17935 WP_131085163.1 3816023..3817756(-) (pilB) [Xanthomonas oryzae strain BB151-3]
ATGAGCGTTTTATCGACCGCAAATCTCGTTGGAATCACCGGAATTGCCCGTAGGCTTGTGCAGGATGGCGCATTGGAGGA
AAGTGCGGCGCGAAGCGCGATGGATCAGGCTGCTCTTGCGAAAGTTCCGCTGCCTCAGTGGTTCTCGGAAAAAAAGCTCG
TCGCTGCCTCGCAGTTGGCGGCCGCCAACGCAGTCGAGTTCGGCATGCCGCTACTGGACGTATCGGCATTTGACGCCAGC
CAGAATGCGGTCAAGCTGGTCAGCGAAGAGTTGCTCCAGAAGTACCATGTGCTGCCGCTGTTCAAGCGCGGCAACCGTTT
GTTCGTGGGGGTGAGCAACCCGACCCAGACCCGGGCGCTGGACGACATCAAGTTCCATACGAACTTGGTGGTCGAGCCGA
TCCTGGTCGATGAGGACCAGATCCGTCGCACCTTGGAGCAGTGGCAGGCCAACAATGCATCGTTGGGCTCATCGCTCGGT
GACGACGACGAGGGTATGGGAGATCTGGACGTCTCCACCGGCGACGAAGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAAGTGCTGGTGGATGCGATCCGGCGGGGGGCCTCGGACA
TCCATTTCGAGCCGTACGAAGACGACTACCGGGTGCGGTTGCGGATCGACGGGTTGCTGAAGAACGTGGCCAAGGCGCCG
GTGAAGCTGAGCCAGCGCATCGCGGCGCGTTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGATTTCCGTGTCAGTACGTTGCCGACCCTGTTCGGTGAGA
AGGTGGTGCTGCGTATTCTGGACGGTAGCGCGGCCAAGCTGGGCATCGAGAAGCTGGGCTACGAGGCGGACCAGCAAAAG
CTGTTCCTGGATGCAATTCATAAGCCTTACGGGATGGTGCTGGTGACCGGGCCCACCGGTTCGGGCAAGACGGTGTCGCT
GTATACGGCGCTGGGCATCCTCAACGACGAAACTCGGAATATCTCGACGGCTGAGGATCCGGTCGAAATTCGCCTGCCTG
GCGTCAACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCGCTGCGTTCGTTCCTGCGACAGGATCCG
GATATCATCATGGTCGGCGAAATCCGCGACCTGGAAACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCACATGGT
GCTGTCCACGCTGCATACCAACGATGCGCCACAGACCATCGCGCGTCTGATGAACATGGGGATCGCGCCGTACAACATCA
CCTCGTCGGTGACCTTGGTCATCGCGCAGCGTCTGGCGCGGCGGTTGTGCAATAACTGCAAGCGCAAGTCGACGTTGCCG
GAGCATGCACTGCTGGCGGAAGGCTTTACGCCGGAGCAGGTCGCGAATATGGAGCTTTATGAAGCCGTGGGTTGCGACGA
GTGCACCGAGGGCTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAAATCGGTGCGATCGTGCTGG
AAGGCGGCAATGCGATGCAGATTGCCGAGGCCGCTCAGAAGATCGGCATCCGGGACTTGCGGCAGTCGGCGTTGATGAAG
GCCTCGCAAGGCGTGACCAGCCTGGCCGAGATCAATCGGGTGACCAAGGACTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(201-468)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(50-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.268

100

0.555
  pilB Acinetobacter baylyi ADP1

55.095

100

0.553
  pilB Legionella pneumophila strain ERS1305867

52.289

98.44

0.515
  pilB Vibrio cholerae strain A1552

48.785

99.827

0.487
  pilF Neisseria gonorrhoeae MS11

49.472

98.44

0.487
  pilB Vibrio campbellii strain DS40M4

46.397

98.614

0.458
  pilB Vibrio parahaemolyticus RIMD 2210633

46.181

97.574

0.451

Multiple sequence alignment