Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EYC56_RS17950 Genome accession   NZ_CP036255
Coordinates   3819094..3820350 (+) Length   418 a.a.
NCBI ID   WP_131085169.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BB151-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3814094..3825350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC56_RS17925 (EYC56_17925) pilR 3814102..3815496 (+) 1395 WP_131085161.1 sigma-54 dependent transcriptional regulator Regulator
  EYC56_RS17930 (EYC56_17930) - 3815493..3816014 (+) 522 WP_207306597.1 Fic family protein -
  EYC56_RS17935 (EYC56_17935) pilB 3816023..3817756 (-) 1734 WP_131085163.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYC56_RS17940 (EYC56_17940) pilA 3817819..3818253 (-) 435 WP_131085165.1 pilin Machinery gene
  EYC56_RS17945 (EYC56_17945) pilE 3818330..3818767 (-) 438 WP_131085167.1 pilin Machinery gene
  EYC56_RS17950 (EYC56_17950) pilC 3819094..3820350 (+) 1257 WP_131085169.1 type II secretion system F family protein Machinery gene
  EYC56_RS17955 (EYC56_17955) - 3820357..3821220 (+) 864 WP_131077923.1 A24 family peptidase -
  EYC56_RS17960 (EYC56_17960) coaE 3821234..3821845 (+) 612 WP_131085171.1 dephospho-CoA kinase -
  EYC56_RS17965 (EYC56_17965) - 3821840..3822871 (-) 1032 WP_131085173.1 IS630 family transposase -
  EYC56_RS17970 (EYC56_17970) - 3823111..3823620 (-) 510 Protein_3263 transposase -
  EYC56_RS17975 (EYC56_17975) - 3823641..3824657 (-) 1017 WP_131086067.1 IS30 family transposase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45899.29 Da        Isoelectric Point: 10.3003

>NTDB_id=347712 EYC56_RS17950 WP_131085169.1 3819094..3820350(+) (pilC) [Xanthomonas oryzae strain BB151-3]
MSVARSSIKKQPVDRNVSEMIAFVWEGTDKRGVKMKGEQQARNSNMLRAELRRQGITPTVVKAKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLILKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=347712 EYC56_RS17950 WP_131085169.1 3819094..3820350(+) (pilC) [Xanthomonas oryzae strain BB151-3]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCGCGTTTGTCTGGGAAGG
CACAGACAAACGTGGCGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATTCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACGCCTACAGTTGTAAAGGCTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATTTCGCCGAAGGAC
ATCGCATTTTTCAGCCGCCAGATGGCAACAATGATGAAATCCGGAGTTCCAATAGTTGGCGCACTTGAAATTATCGGCGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGTTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAATCTGGTACGCGCGGGCGAAGGCGCTGGCGTTCTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAGGGCAAAATCAAAAAAGCCCTGTTTTATCC
TGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTTCCTCAATTTGAAGATGTATTCA
AGGGTTTTGGAGCAGAGCTCCCCGCTTTTACGCAAATGATTGTAGCAGCGTCTCGCTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATTTTTGCCTACAAACGCTCGCCACGCATGCGCCACGGAATGGA
CAGACTTATTTTGAAGTTTCCAGTGATCGGGCAGATTATGCATAATAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGTATTGTTGCCGGCGCGACTGGCAACAAGGTATATGAGGAA
GCGGTACTGCGCATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCTATGAAGCAAGTAAATCTGTTTCCGCA
CATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTGGCGGAGTATTTCG
AGCAGGAAGTGAATAATGCCGTGGACGCGCTAAGTAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGTATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

53

95.694

0.507
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.737

0.507
  pilC Legionella pneumophila strain ERS1305867

51.232

97.129

0.498
  pilC Acinetobacter baumannii D1279779

52

95.694

0.498
  pilG Neisseria gonorrhoeae MS11

45.25

95.694

0.433
  pilG Neisseria meningitidis 44/76-A

44.75

95.694

0.428
  pilC Vibrio cholerae strain A1552

42.677

94.737

0.404
  pilC Vibrio campbellii strain DS40M4

39.646

94.737

0.376
  pilC Thermus thermophilus HB27

37.905

95.933

0.364

Multiple sequence alignment