Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   XapA_RS18340 Genome accession   NZ_CP030164
Coordinates   4074130..4074570 (-) Length   146 a.a.
NCBI ID   WP_005934296.1    Uniprot ID   -
Organism   Xanthomonas citri pv. punicae strain LMG7439     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4069130..4079570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XapA_RS18310 (XapA_18240) pilR 4069509..4070903 (+) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  XapA_RS18320 (XapA_18250) pilB 4071388..4071507 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  XapA_RS18330 (XapA_18260) pilB 4071820..4073556 (-) 1737 WP_174854896.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XapA_RS18335 (XapA_18265) pilA 4073619..4074053 (-) 435 WP_033480656.1 pilin Machinery gene
  XapA_RS18340 (XapA_18270) pilE 4074130..4074570 (-) 441 WP_005934296.1 pilin Machinery gene
  XapA_RS18345 (XapA_18275) pilC 4074897..4076153 (+) 1257 WP_033480657.1 type II secretion system F family protein Machinery gene
  XapA_RS18350 (XapA_18280) - 4076160..4077023 (+) 864 WP_005934302.1 A24 family peptidase -
  XapA_RS18355 (XapA_18285) coaE 4077037..4077645 (+) 609 WP_005934304.1 dephospho-CoA kinase -
  XapA_RS18360 (XapA_18290) - 4078028..4079404 (+) 1377 WP_160964032.1 IS5 family transposase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14934.04 Da        Isoelectric Point: 9.0090

>NTDB_id=299790 XapA_RS18340 WP_005934296.1 4074130..4074570(-) (pilE) [Xanthomonas citri pv. punicae strain LMG7439]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLETAANIKG
KYITSVTVSSGGVITALFNSSNAKLSGKNLVLTPTDNNGSISWGCSTGTTIDQKYLPTSCRTAATP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=299790 XapA_RS18340 WP_005934296.1 4074130..4074570(-) (pilE) [Xanthomonas citri pv. punicae strain LMG7439]
ATGAAGAAGCAAAACGGTTTTACGTTGATCGAACTCATGATCGTGGTCGCGATCATTGCGATTCTGGCTGCCATTGCTCT
GCCGGCTTATCAGGACTACCTCGCGCGTTCGCAGGTCTCTGAAGGCCTGTCGCTGGCATCGGGTGCAAAGACCGCCGTTG
CTGAGACGTATGCCAACACTGGTGCATTTCCGGCCAACAACGCAGCTGCTGGTCTTGAGACTGCGGCAAACATCAAGGGT
AAGTACATCACCTCGGTGACCGTTAGCTCTGGTGGCGTCATCACTGCGCTGTTTAATAGCTCCAATGCGAAGCTGAGTGG
TAAGAACCTTGTCCTGACTCCGACGGACAACAACGGGTCGATCAGCTGGGGCTGCAGCACTGGCACCACCATCGATCAGA
AGTATCTGCCTACCTCTTGCCGTACTGCGGCTACCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

48.75

100

0.534
  pilE Neisseria gonorrhoeae strain FA1090

47.742

100

0.507
  pilA2 Legionella pneumophila str. Paris

50.714

95.89

0.486
  pilA2 Legionella pneumophila strain ERS1305867

50

95.89

0.479
  pilA/pilA1 Eikenella corrodens VA1

45.161

100

0.479
  comP Acinetobacter baylyi ADP1

46

100

0.473
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.87

100

0.452
  pilA Ralstonia pseudosolanacearum GMI1000

38.415

100

0.432
  pilA Acinetobacter baumannii strain A118

42.282

100

0.432
  pilA Vibrio cholerae strain A1552

39.474

100

0.411
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.474

100

0.411
  pilA Vibrio cholerae C6706

39.474

100

0.411
  pilA Pseudomonas aeruginosa PAK

38.816

100

0.404
  pilA Vibrio campbellii strain DS40M4

37.584

100

0.384
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.849

95.205

0.37

Multiple sequence alignment