Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XapA_RS18320 Genome accession   NZ_CP030164
Coordinates   4071388..4071507 (-) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas citri pv. punicae strain LMG7439     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4066388..4076507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XapA_RS18305 (XapA_18235) - 4067567..4069180 (+) 1614 WP_005930973.1 HAMP domain-containing sensor histidine kinase -
  XapA_RS18310 (XapA_18240) pilR 4069509..4070903 (+) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  XapA_RS18320 (XapA_18250) pilB 4071388..4071507 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  XapA_RS18330 (XapA_18260) pilB 4071820..4073556 (-) 1737 WP_174854896.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XapA_RS18335 (XapA_18265) pilA 4073619..4074053 (-) 435 WP_033480656.1 pilin Machinery gene
  XapA_RS18340 (XapA_18270) pilE 4074130..4074570 (-) 441 WP_005934296.1 pilin Machinery gene
  XapA_RS18345 (XapA_18275) pilC 4074897..4076153 (+) 1257 WP_033480657.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=299787 XapA_RS18320 WP_005915819.1 4071388..4071507(-) (pilB) [Xanthomonas citri pv. punicae strain LMG7439]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=299787 XapA_RS18320 WP_005915819.1 4071388..4071507(-) (pilB) [Xanthomonas citri pv. punicae strain LMG7439]
ATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATTCGCGATTTGCGCCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
CACCAGCCTGGCCGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385

Multiple sequence alignment