Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XapA_RS18345 Genome accession   NZ_CP030164
Coordinates   4074897..4076153 (+) Length   418 a.a.
NCBI ID   WP_033480657.1    Uniprot ID   -
Organism   Xanthomonas citri pv. punicae strain LMG7439     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4069897..4081153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XapA_RS18320 (XapA_18250) pilB 4071388..4071507 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  XapA_RS18330 (XapA_18260) pilB 4071820..4073556 (-) 1737 WP_174854896.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XapA_RS18335 (XapA_18265) pilA 4073619..4074053 (-) 435 WP_033480656.1 pilin Machinery gene
  XapA_RS18340 (XapA_18270) pilE 4074130..4074570 (-) 441 WP_005934296.1 pilin Machinery gene
  XapA_RS18345 (XapA_18275) pilC 4074897..4076153 (+) 1257 WP_033480657.1 type II secretion system F family protein Machinery gene
  XapA_RS18350 (XapA_18280) - 4076160..4077023 (+) 864 WP_005934302.1 A24 family peptidase -
  XapA_RS18355 (XapA_18285) coaE 4077037..4077645 (+) 609 WP_005934304.1 dephospho-CoA kinase -
  XapA_RS18360 (XapA_18290) - 4078028..4079404 (+) 1377 WP_160964032.1 IS5 family transposase -
  XapA_RS18365 (XapA_18295) - 4079536..4080957 (-) 1422 WP_005934142.1 HlyD family type I secretion periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45944.28 Da        Isoelectric Point: 10.3003

>NTDB_id=299791 XapA_RS18345 WP_033480657.1 4074897..4076153(+) (pilC) [Xanthomonas citri pv. punicae strain LMG7439]
MSVARSSIKKQQVDRNVSEMSPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=299791 XapA_RS18345 WP_033480657.1 4074897..4076153(+) (pilC) [Xanthomonas citri pv. punicae strain LMG7439]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACAGGTGGATAGAAATGTCAGTGAAATGAGCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGAGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACCCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATATCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCTGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
GGGGCACAAGAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACACCCAGTCCAGTTCGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAAGGCGCTGGCGTCTTGGAA
ACCGTCCTAGATACAGTTGCGAATTATAAAGAAAATATTGAGGCCCTTAAGGGAAAAATCAAAAAAGCCCTATTTTATCC
TGCCATGGTAATGGCAGTCGCAATCATTGTGAGCGGTATACTATTAGTCTTCGTGGTCCCTCAATTTGAAGATGTATTTA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTTATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATTGGGCAGATTATGCACAACAGCTCGATTGCTCGATTTGCCCGAACTACGGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCTCTAAGTATTGTTGCCGGCGCAACTGGCAACAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTCCCACA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTCAATAATGCCGTAGACGCGCTAAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

53.041

98.325

0.522
  pilC Acinetobacter baumannii D1279779

51.332

98.804

0.507
  pilC Pseudomonas stutzeri DSM 10701

53.266

95.215

0.507
  pilC Legionella pneumophila strain ERS1305867

51.478

97.129

0.5
  pilG Neisseria gonorrhoeae MS11

45.5

95.694

0.435
  pilG Neisseria meningitidis 44/76-A

45

95.694

0.431
  pilC Vibrio cholerae strain A1552

42.677

94.737

0.404
  pilC Vibrio campbellii strain DS40M4

39.25

95.694

0.376
  pilC Thermus thermophilus HB27

37.905

95.933

0.364

Multiple sequence alignment