Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ETA15_RS09850 Genome accession   NZ_CP035403
Coordinates   1863902..1864333 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM103581     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1858902..1869333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS09830 (ETA15_09830) spoVS 1859464..1859724 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ETA15_RS09835 (ETA15_09835) tdh 1859989..1861032 (+) 1044 WP_017694900.1 L-threonine 3-dehydrogenase -
  ETA15_RS09840 (ETA15_09840) kbl 1861045..1862223 (+) 1179 WP_017694901.1 glycine C-acetyltransferase -
  ETA15_RS09845 (ETA15_09845) miaB 1862371..1863900 (+) 1530 WP_017694902.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ETA15_RS09850 (ETA15_09850) ymcA 1863902..1864333 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ETA15_RS09855 (ETA15_09855) cotE 1864595..1865140 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ETA15_RS09860 (ETA15_09860) hexA 1865273..1867849 (+) 2577 WP_017694903.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=299789 ETA15_RS09850 WP_003231834.1 1863902..1864333(+) (ymcA) [Bacillus subtilis strain SRCM103581]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=299789 ETA15_RS09850 WP_003231834.1 1863902..1864333(+) (ymcA) [Bacillus subtilis strain SRCM103581]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACTTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment