Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | XapA_RS18335 | Genome accession | NZ_CP030164 |
| Coordinates | 4073619..4074053 (-) | Length | 144 a.a. |
| NCBI ID | WP_033480656.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. punicae strain LMG7439 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4068619..4079053
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XapA_RS18310 (XapA_18240) | pilR | 4069509..4070903 (+) | 1395 | WP_005930970.1 | sigma-54 dependent transcriptional regulator | Regulator |
| XapA_RS18320 (XapA_18250) | pilB | 4071388..4071507 (-) | 120 | WP_005915819.1 | hypothetical protein | Machinery gene |
| XapA_RS18330 (XapA_18260) | pilB | 4071820..4073556 (-) | 1737 | WP_174854896.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XapA_RS18335 (XapA_18265) | pilA | 4073619..4074053 (-) | 435 | WP_033480656.1 | pilin | Machinery gene |
| XapA_RS18340 (XapA_18270) | pilE | 4074130..4074570 (-) | 441 | WP_005934296.1 | pilin | Machinery gene |
| XapA_RS18345 (XapA_18275) | pilC | 4074897..4076153 (+) | 1257 | WP_033480657.1 | type II secretion system F family protein | Machinery gene |
| XapA_RS18350 (XapA_18280) | - | 4076160..4077023 (+) | 864 | WP_005934302.1 | A24 family peptidase | - |
| XapA_RS18355 (XapA_18285) | coaE | 4077037..4077645 (+) | 609 | WP_005934304.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14954.22 Da Isoelectric Point: 7.8193
>NTDB_id=299789 XapA_RS18335 WP_033480656.1 4073619..4074053(-) (pilA) [Xanthomonas citri pv. punicae strain LMG7439]
MKVRGFTLIELMIVVAIIAILAAIALPAYQDYLVRAQVAEGLSLASGAKVAVEEFHWAQSVSPTSNAQAGLGSADSIKGR
YVSSVTVGADGIITVAFATLGANESIRGSQLQLVPDWSGAGSTVWRCDGAGTTLQAKYLPKACR
MKVRGFTLIELMIVVAIIAILAAIALPAYQDYLVRAQVAEGLSLASGAKVAVEEFHWAQSVSPTSNAQAGLGSADSIKGR
YVSSVTVGADGIITVAFATLGANESIRGSQLQLVPDWSGAGSTVWRCDGAGTTLQAKYLPKACR
Nucleotide
Download Length: 435 bp
>NTDB_id=299789 XapA_RS18335 WP_033480656.1 4073619..4074053(-) (pilA) [Xanthomonas citri pv. punicae strain LMG7439]
GTGAAAGTGCGCGGATTCACTTTGATTGAGTTGATGATTGTAGTTGCGATCATTGCAATTCTCGCTGCAATTGCATTGCC
CGCGTATCAGGATTACCTGGTGAGAGCCCAAGTGGCGGAAGGGTTAAGTCTTGCCTCAGGTGCCAAGGTGGCAGTGGAGG
AGTTCCACTGGGCCCAAAGCGTCTCTCCGACATCAAACGCTCAGGCTGGATTGGGTAGCGCTGATAGCATAAAAGGTCGA
TATGTTTCGTCCGTTACCGTTGGTGCGGATGGCATCATAACTGTCGCGTTCGCTACTTTAGGCGCGAACGAATCTATTCG
AGGGTCGCAGTTGCAGTTGGTACCTGACTGGTCTGGCGCAGGCTCGACGGTGTGGCGATGCGATGGAGCCGGCACGACCC
TTCAGGCAAAATATCTACCTAAAGCTTGCAGATGA
GTGAAAGTGCGCGGATTCACTTTGATTGAGTTGATGATTGTAGTTGCGATCATTGCAATTCTCGCTGCAATTGCATTGCC
CGCGTATCAGGATTACCTGGTGAGAGCCCAAGTGGCGGAAGGGTTAAGTCTTGCCTCAGGTGCCAAGGTGGCAGTGGAGG
AGTTCCACTGGGCCCAAAGCGTCTCTCCGACATCAAACGCTCAGGCTGGATTGGGTAGCGCTGATAGCATAAAAGGTCGA
TATGTTTCGTCCGTTACCGTTGGTGCGGATGGCATCATAACTGTCGCGTTCGCTACTTTAGGCGCGAACGAATCTATTCG
AGGGTCGCAGTTGCAGTTGGTACCTGACTGGTCTGGCGCAGGCTCGACGGTGTGGCGATGCGATGGAGCCGGCACGACCC
TTCAGGCAAAATATCTACCTAAAGCTTGCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.42 |
100 |
0.486 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
43.949 |
100 |
0.479 |
| pilE | Neisseria gonorrhoeae MS11 |
42.405 |
100 |
0.465 |
| pilA2 | Legionella pneumophila str. Paris |
45.139 |
100 |
0.451 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
45.139 |
100 |
0.451 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.519 |
100 |
0.451 |
| comP | Acinetobacter baylyi ADP1 |
40.667 |
100 |
0.424 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.073 |
100 |
0.41 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.845 |
98.611 |
0.403 |
| pilA | Acinetobacter baumannii strain A118 |
37.589 |
97.917 |
0.368 |