Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilT   Type   Machinery gene
Locus tag   MLG_RS01740 Genome accession   NC_008340
Coordinates   385353..386390 (+) Length   345 a.a.
NCBI ID   WP_011628093.1    Uniprot ID   Q0ABU0
Organism   Alkalilimnicola ehrlichii MLHE-1     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 380353..391390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLG_RS01710 (Mlg_0336) - 380472..381179 (-) 708 WP_011628087.1 methyltransferase domain-containing protein -
  MLG_RS01715 (Mlg_0337) metW 381291..381890 (-) 600 WP_041718186.1 methionine biosynthesis protein MetW -
  MLG_RS01720 (Mlg_0338) - 381896..383050 (-) 1155 WP_011628089.1 homoserine O-acetyltransferase -
  MLG_RS01725 (Mlg_0339) - 383130..383708 (-) 579 WP_011628090.1 YggT family protein -
  MLG_RS01730 (Mlg_0340) proC 383708..384535 (-) 828 WP_011628091.1 pyrroline-5-carboxylate reductase -
  MLG_RS01735 (Mlg_0341) - 384532..385245 (-) 714 WP_011628092.1 YggS family pyridoxal phosphate-dependent enzyme -
  MLG_RS01740 (Mlg_0342) pilT 385353..386390 (+) 1038 WP_011628093.1 type IV pilus twitching motility protein PilT Machinery gene
  MLG_RS01745 (Mlg_0343) pilU 386451..387608 (+) 1158 WP_011628094.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  MLG_RS01750 (Mlg_0344) - 387868..388584 (-) 717 WP_011628095.1 dihydroorotate dehydrogenase -
  MLG_RS01755 (Mlg_0345) - 388568..389848 (-) 1281 WP_011628096.1 dihydroorotase -
  MLG_RS01760 (Mlg_0346) - 389845..390810 (-) 966 WP_011628097.1 aspartate carbamoyltransferase catalytic subunit -
  MLG_RS01765 (Mlg_0347) pyrR 390807..391316 (-) 510 WP_011628098.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 38158.83 Da        Isoelectric Point: 6.3713

>NTDB_id=26285 MLG_RS01740 WP_011628093.1 385353..386390(+) (pilT) [Alkalilimnicola ehrlichii MLHE-1]
MDIADLLAFAVKNNASDLHIAAGLPPMIRVDGDVRRINLPEMEHKQVHSMIYDIMNDKQRKDYEEFLETDFSFEIPGLAR
FRVNVFNQNRGAAAVFRTIPSEVLTLDDLGAPDVFKEIADNPRGLVLVTGPTGSGKSTTLAAMVDYVNKKEYGHILTIED
PIEFVHESHRCLVNQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAAEKSMVRSMLSESLRAVIAQALLKKIGGGRIAAHEIMIGTAAIRNLIREDKVAQMYSAIQTGHTAGMQTLDQCL
QHLVAKGLVTKADARPKAVNRDLFN

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=26285 MLG_RS01740 WP_011628093.1 385353..386390(+) (pilT) [Alkalilimnicola ehrlichii MLHE-1]
ATGGATATCGCAGACCTTCTCGCCTTCGCGGTCAAGAACAACGCCTCGGACCTGCACATCGCAGCCGGATTGCCGCCCAT
GATACGCGTGGACGGTGATGTGCGTCGAATCAACCTGCCTGAGATGGAACACAAGCAGGTGCATTCGATGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTACGAGGAGTTTCTCGAGACCGATTTCTCCTTCGAGATCCCCGGCCTGGCGCGC
TTTCGTGTCAATGTCTTCAACCAGAACCGTGGCGCGGCCGCGGTCTTCCGCACCATCCCCTCCGAGGTGCTTACCCTGGA
CGACCTGGGGGCACCGGACGTGTTCAAGGAGATTGCCGATAACCCCCGGGGCCTGGTGCTGGTCACCGGTCCCACCGGCT
CCGGCAAGTCCACCACCCTGGCCGCCATGGTGGACTATGTGAACAAGAAGGAGTACGGCCATATCCTCACCATTGAGGAC
CCCATCGAGTTCGTCCACGAGTCCCACCGCTGTCTGGTCAACCAGCGCGAGGTGCACCGCGACACCCTGGGCTTCAACGA
GGCGCTGCGCTCGGCCCTGCGCGAGGACCCGGATATCATCCTGGTGGGTGAGATGCGCGACCTGGAGACCATCCGCCTGG
CACTCACCGCCGCCGAGACCGGGCACCTGGTCTTCGGCACCCTGCACACCAGCTCCGCGGCCAAGACCATCGACCGGATC
ATCGACGTCTTTCCGGCCGCCGAGAAGTCCATGGTGCGCTCCATGCTCTCCGAGTCGCTGCGCGCGGTCATTGCCCAGGC
ACTGCTCAAGAAGATCGGCGGTGGCCGGATCGCCGCCCACGAGATCATGATCGGCACCGCTGCGATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGGCCATCCAGACCGGGCACACCGCCGGCATGCAGACGCTCGATCAATGCCTG
CAGCACCTAGTGGCCAAGGGGTTGGTCACCAAGGCCGATGCCCGGCCCAAGGCGGTCAACCGGGATTTGTTCAACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q0ABU0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

81.953

97.971

0.803

  pilT Pseudomonas stutzeri DSM 10701

80.523

99.71

0.803

  pilT Acinetobacter baylyi ADP1

78.198

99.71

0.78

  pilT Acinetobacter baumannii D1279779

77.326

99.71

0.771

  pilT Acinetobacter baumannii strain A118

77.326

99.71

0.771

  pilT Acinetobacter nosocomialis M2

77.035

99.71

0.768

  pilT Legionella pneumophila strain Lp02

75.872

99.71

0.757

  pilT Legionella pneumophila strain ERS1305867

75.872

99.71

0.757

  pilT Vibrio cholerae O1 biovar El Tor strain E7946

69.436

97.681

0.678

  pilT Vibrio cholerae strain A1552

69.436

97.681

0.678

  pilT Neisseria meningitidis 8013

66.764

99.42

0.664

  pilT Neisseria gonorrhoeae MS11

66.472

99.42

0.661

  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.986

100

0.49

  pilU Pseudomonas stutzeri DSM 10701

42.687

97.101

0.414

  pilU Vibrio cholerae strain A1552

40

97.101

0.388

  pilU Acinetobacter baylyi ADP1

39.583

97.391

0.386

  pilB Acinetobacter baylyi ADP1

32.637

100

0.362


Multiple sequence alignment