Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   SSA_RS04110 Genome accession   NC_009009
Coordinates   804004..805116 (+) Length   370 a.a.
NCBI ID   WP_002897871.1    Uniprot ID   A3CM49
Organism   Streptococcus sanguinis SK36     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 799004..810116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS04085 (SSA_0818) - 799815..800546 (+) 732 WP_011836734.1 polyphosphate polymerase domain-containing protein -
  SSA_RS04090 (SSA_0819) - 800558..801241 (+) 684 WP_011836735.1 DUF4956 domain-containing protein -
  SSA_RS04095 (SSA_0820) rpsU 801389..801565 (+) 177 WP_000048054.1 30S ribosomal protein S21 -
  SSA_RS04100 (SSA_0822) mscL 801679..802062 (-) 384 WP_002904176.1 large conductance mechanosensitive channel protein MscL -
  SSA_RS04105 (SSA_0824) dnaG 802217..804001 (+) 1785 WP_317627779.1 DNA primase -
  SSA_RS04110 (SSA_0825) rpoS 804004..805116 (+) 1113 WP_002897871.1 RNA polymerase sigma factor RpoD Regulator
  SSA_RS04115 (SSA_0826) - 805238..805576 (+) 339 WP_011836737.1 metal-sulfur cluster assembly factor -
  SSA_RS04125 (SSA_0827) - 806173..807012 (+) 840 WP_011836738.1 DUF695 domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42331.94 Da        Isoelectric Point: 4.4233

>NTDB_id=26285 SSA_RS04110 WP_002897871.1 804004..805116(+) (rpoS) [Streptococcus sanguinis SK36]
MATKQKEVTTLDVQIAEFIRNHKQTGVATDDEINDQLVIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLNNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLSNEEEQELAILVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=26285 SSA_RS04110 WP_002897871.1 804004..805116(+) (rpoS) [Streptococcus sanguinis SK36]
ATGGCTACAAAACAAAAAGAAGTAACAACATTAGATGTTCAAATTGCAGAATTTATCCGCAACCACAAGCAGACAGGTGT
TGCGACCGATGATGAAATCAATGACCAACTGGTCATTCCTTTCACTTTGGACGCTGATGGGATTGAGGATTTGCTGCAAC
GCATTCAGGATGCTGGCATCTCAATTACAGATAAGGAAGGAAATCCTAGCGCGCGCGTCTTAAATAATGAAGAGGAAGAA
GCGGAGCTGACGGATGAAGAGCTCTTAGGCAGCAATTCAGCCAAGGTCAATGACCCAGTCCGCATGTATCTGAAAGAAAT
TGGGGTTGTGCCCCTTCTAAGCAATGAAGAAGAGCAGGAGTTGGCTATCTTGGTAGAGCAGGGAGACTTGGAAGCCAAGC
AGCGCCTGGCTGAGGCCAATCTTCGTCTGGTTGTTTCCATTGCTAAGCGTTATGTCGGCCGTGGTATGCAGTTCCTTGAC
TTGATTCAAGAAGGAAACATGGGGCTGATGAAGGCCGTTGATAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACTTA
TGCGACTTGGTGGATCCGTCAGGCCATTACCCGTGCGATTGCTGACCAAGCTCGGACTATTCGGATTCCGGTCCATATGG
TGGAAACCATTAACAAGCTAGTCCGCGAGCAACGTAATCTCTTGCAGGAATTAGGTCAAGACCCAACACCAGAGCAAATC
GCTGAGCGCATGGATATGACACCGGATAAAGTTCGTGAGATTCTCAAGATTGCTCAAGAGCCAGTTTCTTTGGAAACACC
TATCGGTGAGGAAGATGACAGCCATCTGGGTGACTTTATCGAAGACGAAGTGATTGAAAATCCAGTTGACTATACAACTC
GTGTCGTCCTTCGTGAGCAGCTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGCTTT
GGTCTAGACGATGGAAAAATGCGGACACTGGAAGATGTCGGCAAGGTCTTCAATGTCACCCGCGAGCGGATTCGCCAGAT
TGAAGCCAAAGCCCTGCGCAAACTCCGCCATCCAAGCCGCAGCAAACCACTCAGAGACTTTATTGAAGATTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(215-291)

Sigma-70 region 2 (Sigma70_r2)

(136-205)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(98-130)

Sigma-70, region 4 (Sigma70_r4)

(304-357)

Sigma-70 factor, region 1.1 (Sigma70_r1_1)

(14-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CM49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

46.575

78.919

0.368

Multiple sequence alignment