Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SanJ4211_RS07860 Genome accession   NZ_CP012805
Coordinates   1559525..1561501 (-) Length   658 a.a.
NCBI ID   WP_021002030.1    Uniprot ID   A0AAP6BPU6
Organism   Streptococcus anginosus strain J4211     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554525..1566501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS07845 (SanJ4211_1551c) amiD 1554549..1555475 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  SanJ4211_RS07850 (SanJ4211_1552c) amiC 1555475..1556971 (-) 1497 WP_003026183.1 ABC transporter permease Regulator
  SanJ4211_RS07855 (SanJ4211_1553c) amiA3 1557348..1559327 (-) 1980 WP_021002029.1 peptide ABC transporter substrate-binding protein Regulator
  SanJ4211_RS07860 (SanJ4211_1554c) amiA3 1559525..1561501 (-) 1977 WP_021002030.1 peptide ABC transporter substrate-binding protein Regulator
  SanJ4211_RS07865 (SanJ4211_1555c) - 1561667..1562350 (-) 684 WP_106079118.1 B3/4 domain-containing protein -
  SanJ4211_RS07870 (SanJ4211_1556c) - 1562584..1564194 (-) 1611 WP_021002032.1 CTP synthase -
  SanJ4211_RS07875 (SanJ4211_1557c) rpoE 1564378..1564965 (-) 588 WP_003026189.1 DNA-directed RNA polymerase subunit delta -
  SanJ4211_RS07880 (SanJ4211_1558c) tig 1565203..1566486 (-) 1284 WP_003026190.1 trigger factor -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72336.78 Da        Isoelectric Point: 7.8834

>NTDB_id=157723 SanJ4211_RS07860 WP_021002030.1 1559525..1561501(-) (amiA3) [Streptococcus anginosus strain J4211]
MKKSKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSSDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDSIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGSGTAALALNIDRQSYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRESYAAQVNGKDGAATAIRNMFVPSNFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPTKAKEKFAKAKAALQAQGVQFPIHLDVPTVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NVTYYAPNAAGEDWDISGAVGWNPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSSTYFKYIKVGNDTVTKKDYEAAKKKWQK
EKAESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=157723 SanJ4211_RS07860 WP_021002030.1 1559525..1561501(-) (amiA3) [Streptococcus anginosus strain J4211]
ATGAAAAAAAGTAAAATCATCGCAGTTGCGGGGCTAGCTCTTTTAACGTCTGGTCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCAGCTGAAACAAAATTTGGTTATGTGTATTCTAGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGGGAAGAATACGCAGAAGTTAAAGCGCAAGACTTTGTAACTGGTTTGAAACATGCTGCCGATAAAAAATCTGAGGCGC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGACTTTTCAACGGTAGGTGTG
AAAGCAGTTGATGATTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCAGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGACCCTAACTCAATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAACAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAGCATTAAACTTGCTTACTATGATGGTCAAGACCAGGACTCATTGGCTCGTAATTTCAAAGA
TGGGGCATACTCATACGCACGCCTCTTCCCAACAAGTTCAAACTTTGCAACTTTTGAAAAACAATTCAAGGACAATATCT
ATACAGCAGAAGCAGGCTCTGGAACGGCTGCTTTAGCCCTTAATATTGACCGTCAATCTTACAACCACACGGCTAAGAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAGGCATTGTTGAACAAAGACTTCCGTCAAGCTTTGAACTTTGCACTTGACCG
CGAATCTTATGCAGCACAAGTAAATGGTAAAGATGGTGCTGCCACAGCAATCCGTAATATGTTTGTACCATCTAATTTTG
TTCAAGTTGGTGAAAAATCATTTAGTGATGTTGTAGAAGAAAAATTAGCAAGCTATGGCGATGACTGGAAGGGTGTCAAA
CTAGCTGATTCACAAAACGGCTTGTACAATCCAACAAAAGCAAAAGAAAAATTTGCAAAAGCAAAAGCAGCTTTGCAAGC
TCAAGGTGTACAGTTCCCAATCCACTTAGATGTTCCTACTGTAGAAACTTCTAAGAGCTACGTTGCTCGGATGCAGTCTT
TAAAACAATCTGTTGAAAAAGTACTTGGTAAAGAAAATGTTGTCATGGACTTGAACATGATGTCAGAAGATGACTTTAAC
AACGTCACTTACTATGCTCCAAATGCAGCTGGAGAAGACTGGGATATCTCAGGCGCTGTTGGTTGGAATCCCGACTATCA
AGATCCATCTACTTATCTTGACATTTTGAAATCAACAGCTTCTGATAATACGAAGACATGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTCGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTACTTCAAATACATTAAAGTCGGTAACGATACTGTCACTAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCCGAGTCTAATAAAAAAGCTCAAGATGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.188

100

0.643
  amiA3 Streptococcus thermophilus LMG 18311

64.036

100

0.641
  amiA Streptococcus salivarius strain HSISS4

63.07

100

0.631

Multiple sequence alignment