Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R70331_RS15105 Genome accession   NZ_CP009284
Coordinates   3593143..3594894 (-) Length   583 a.a.
NCBI ID   WP_042176847.1    Uniprot ID   A0A089KYC0
Organism   Paenibacillus sp. FSL R7-0331     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588143..3599894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R70331_RS15090 (R70331_15620) - 3588622..3589701 (+) 1080 WP_042176839.1 glycosyltransferase family 4 protein -
  R70331_RS15095 (R70331_15625) cls 3589882..3591324 (+) 1443 WP_042176841.1 cardiolipin synthase -
  R70331_RS15100 (R70331_15630) rcrQ 3591383..3593143 (-) 1761 WP_042176844.1 ABC transporter ATP-binding protein Regulator
  R70331_RS15105 (R70331_15635) rcrP 3593143..3594894 (-) 1752 WP_042176847.1 ABC transporter ATP-binding protein Regulator
  R70331_RS15110 (R70331_15640) - 3595071..3596138 (-) 1068 WP_197071336.1 HAMP domain-containing sensor histidine kinase -
  R70331_RS15115 (R70331_15645) - 3596135..3596809 (-) 675 WP_042176848.1 response regulator transcription factor -
  R70331_RS31550 - 3596953..3597123 (+) 171 WP_156131135.1 hypothetical protein -
  R70331_RS15120 (R70331_15655) - 3597210..3597857 (-) 648 WP_042176849.1 TetR/AcrR family transcriptional regulator -
  R70331_RS15125 (R70331_15660) - 3597850..3599052 (-) 1203 WP_042176851.1 MFS transporter -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63616.89 Da        Isoelectric Point: 6.5160

>NTDB_id=128161 R70331_RS15105 WP_042176847.1 3593143..3594894(-) (rcrP) [Paenibacillus sp. FSL R7-0331]
MIKLLKNLEAKEWGLFIVSVLFIVTQVWLDLELPDYMSDITRLIQTPGSEMTEIMATGGWMLLCALGSLATSIIVAGIAA
KIAANFSARLRSKLFNKVQSFSMEEINSFSTASLITRSTNDITQVQMLIVIGLQLLIKAPLLAVWAILKITGKSWEWSLA
TGTAVGVLIVIVGICVVLVLPKFQKLQVLTDNLNRVARENLTGLRVIRAYNAEKYQEDKFGAANNELTRTNLFANNVLSA
MMPSITLIMSGLSLAIYWIGAVMIQNAGPGAKMGLFSDMIVFSSYAMQVVMAFMMLIIIFILMPRAHVSAKRINEVLDTR
PSLTDGQLTSSPSRHAGEVEFRNVSFKYPDAEDYVLKDISFTAAKGETVAFIGSTGCGKSTVVNLIPRFFDATSGEVLVG
GINVNQYEQSALRNKMGYVSQKAVLFGGTVTSNIAFGDNGRDLGSDVVDAVYTSQAADFVEKMDGSYDAHIAQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKESSGTTMLIVAQRIGTIKDADKIIVLEAGQIAGMGTHD
ELMESCSIYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=128161 R70331_RS15105 WP_042176847.1 3593143..3594894(-) (rcrP) [Paenibacillus sp. FSL R7-0331]
ATGATTAAATTACTTAAGAACCTGGAAGCGAAAGAATGGGGCCTGTTCATAGTCAGTGTCCTGTTCATCGTTACCCAGGT
ATGGCTCGATCTGGAGCTGCCCGATTATATGAGCGATATTACCCGGCTAATTCAAACACCCGGAAGTGAAATGACTGAAA
TAATGGCTACCGGCGGCTGGATGCTGCTCTGTGCGCTGGGCAGTCTCGCCACCTCCATTATTGTTGCCGGAATCGCGGCC
AAAATTGCCGCTAATTTCTCTGCCAGACTCCGATCCAAGCTTTTTAACAAGGTCCAGTCCTTCTCCATGGAGGAAATCAA
CAGCTTCTCCACCGCAAGCCTTATCACCCGTTCAACGAATGATATCACTCAGGTACAGATGCTGATTGTCATCGGCCTGC
AGCTGCTGATCAAGGCTCCGCTGCTTGCTGTATGGGCGATTCTCAAGATTACCGGAAAGAGCTGGGAGTGGTCGCTGGCC
ACAGGCACTGCTGTCGGCGTGCTGATTGTCATCGTCGGTATTTGTGTAGTGCTGGTGCTGCCAAAATTCCAGAAGCTACA
GGTGCTGACAGACAATTTGAACCGGGTAGCCAGAGAGAATCTGACCGGACTTCGTGTCATTCGCGCTTACAACGCCGAGA
AATATCAGGAGGACAAATTCGGCGCGGCGAACAACGAGCTGACAAGGACCAATCTATTCGCAAACAATGTGTTATCAGCA
ATGATGCCGAGCATTACTCTGATCATGAGCGGTCTGAGCCTAGCGATATACTGGATCGGTGCAGTGATGATCCAGAATGC
CGGTCCAGGCGCCAAAATGGGACTGTTCTCCGACATGATCGTCTTCTCCTCCTATGCCATGCAGGTCGTCATGGCCTTCA
TGATGCTGATCATCATCTTTATCCTTATGCCGCGTGCACATGTCTCAGCCAAGCGGATTAATGAGGTGCTGGATACACGC
CCGAGCCTGACAGACGGCCAGCTTACCTCCTCCCCTTCCAGACATGCCGGTGAAGTGGAATTCCGCAATGTCAGCTTTAA
ATACCCGGATGCCGAGGATTATGTGTTGAAGGATATCAGCTTTACAGCCGCCAAAGGTGAAACCGTAGCGTTTATCGGTT
CAACAGGCTGCGGCAAGAGCACCGTCGTCAATCTGATTCCGCGCTTCTTCGATGCTACCTCAGGAGAAGTCCTGGTCGGC
GGCATTAATGTCAATCAATATGAACAGAGTGCACTGCGTAACAAAATGGGCTATGTATCACAGAAAGCAGTACTGTTCGG
CGGAACCGTAACCTCCAATATTGCCTTCGGCGATAACGGGCGTGATCTGGGTTCTGATGTCGTTGATGCCGTTTATACTT
CCCAGGCTGCTGATTTTGTTGAGAAAATGGACGGCAGCTACGATGCGCATATTGCCCAGGGCGGAACCAACCTCTCTGGC
GGACAGAAGCAGCGTTTATCCATTGCACGGGCCATTGCCCGCCGTCCGGAAATTCTGATTTTTGACGACTCCTTCTCAGC
GCTTGATTACAAGACAGACCGCAAGCTGCGCAGTGAGCTGAAGAAGGAATCAAGCGGCACCACGATGCTGATTGTTGCAC
AGCGGATTGGCACGATAAAGGATGCGGACAAGATCATCGTACTGGAGGCCGGACAAATCGCCGGCATGGGAACCCATGAT
GAACTGATGGAATCCTGCAGCATTTATCAGGAAATTGCTTATTCACAGCTGTCGAAGGAGGAGCTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089KYC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.181

100

0.533

Multiple sequence alignment