Pseudomonas putida
Experimental investigation has been performed.
Bioinformatics investigation has been performed| T6SS ID | Type | Organism | Replicon (Accession) | Location | Function |
|---|---|---|---|---|---|
| T6SS00013 | i1 | Pseudomonas putida KT2440 | chromosome (NC_002947) | 2984253..3012550 | anti-bacterial |
| T6SS00015 | i1 | Pseudomonas putida KT2440 | chromosome (NC_002947) | 4590927..4618219 | anti-bacterial |
| T6SS00014 | i4b | Pseudomonas putida KT2440 | chromosome (NC_002947) | 3470069..3499780 | anti-bacterial |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Regulator ID | Locus tag (Gene) | Related T6SS | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|---|
| REG0074 |
PP_4373 (FleQ) | T6SS00014 |
protein | c-di-GMP regulatory pathway | Pseudomonas putida KT2440 | chromosome (NC_002947) | 4963882..4965357 (-) | 26991062 | K1-T6SS (hcp1) expression (↑) |
| REG0075 |
PP_0952 (RopN) | T6SS00014 |
protein | c-di-GMP regulatory pathway | Pseudomonas putida KT2440 | chromosome (NC_002947) | 1094567..1096060 (-) | 26987688 | PP_4373 (FleQ) (↑) |
| REG0076 |
PP_0914 (BifA) | T6SS00014 |
protein | c-di-GMP regulatory pathway | Pseudomonas putida KT2440 | chromosome (NC_002947) | 1055990..1058071 (-) | 26987650 | the levels of c-di-GMP (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Related T6SS | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|---|
| EFF01838 |
PP_3108 (Tke2) | Tde | IMU00355 |
T6SS00014 |
Pseudomonas putida KT2440 | chromosome (NC_002947) | 3511333..3515490 (+) | 499256461 |
| EFF01837 |
PP_3089 (hcp1) | - | - | T6SS00014 |
Pseudomonas putida KT2440 | chromosome (NC_002947) | 3478061..3478579 (-) | 898330886 |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Immunity protein ID | Locus tag (Gene) | Related T6SS | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Cognate effector |
|---|---|---|---|---|---|---|---|
| IMU00331 |
PPUTGB1_RS14045 (Tri1) | T6SS00252 |
Pseudomonas putida GB-1 | chromosome (NC_010322) | 3096203..3097318 (-) | 501229376 | EFF01495 |
| IMU00332 |
KKK_RS13285 (Tri1) | - | Pseudomonas putida B6-2 | chromosome (NZ_CP015202) | 2922386..2923501 (-) | 657294452 | EFF01495 |
| IMU00355 |
PP_5576 (Tki2) | T6SS00014 |
Pseudomonas putida KT2440 | chromosome (NC_002947) | 3515484..3515960 (+) | 898330862 | EFF01838 |
Experimental investigation has been performed. Bioinformatics investigation has been performed| ID | Locus tag (Gene) | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Response to T6SS attack | Known or putative function |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed| Accessory protein ID | Locus tag (Gene) | Related T6SS | Type | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|---|
| ACP00009 |
PP_RS16060 (tagB1) | T6SS00014 |
structure affiliated protein | Pseudomonas putida KT2440 | chromosome (NC_002947) | 3496832..3497581 (-) | 898330878 | PP_RS15990 (TssA) | - |