Detailed information of effector
Summary
| Effector ID | EFF01837  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00014 (Type i4b) |
| Strain | Pseudomonas putida KT2440 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Description | hcp |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PP_3089 (hcp1) |
| Coordinates (Strand) | 3478061..3478579 (-) |
| NCBI ID | 898330886 |
| RefSeq | NC_002947 |
| Uniprot ID | A0A2V4FJ48_9PSED |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 3.1e-40 | 6..145 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MAFDAYIQIDGIPGEVLDEKHKDWIEVLGYEYGATQATSATASSSGGASSERVALSDFKIRKAVDKASAKLFEHCCTGKHIAKLKLNVNRAGGDKVTYLTIDMEEVVVSSVKFVAGGNQSGEDKAVSDLPVEEISFNFARIKTTYTQQNRTDGQAGGNIVGGWDRTANKVFA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9734 | - | - |
Protein sequence: 173 a.a. .
>EFF01837 NC_002947:c3478579-3478061 (Unknown) [Pseudomonas putida KT2440]
MAFDAYIQIDGIPGEVLDEKHKDWIEVLGYEYGATQATSATASSSGGASSERVALSDFKIRKAVDKASAKLFEHCCTGKH
IAKLKLNVNRAGGDKVTYLTIDMEEVVVSSVKFVAGGNQSGEDKAVSDLPVEEISFNFARIKTTYTQQNRTDGQAGGNIV
GGWDRTANKVFA*
MAFDAYIQIDGIPGEVLDEKHKDWIEVLGYEYGATQATSATASSSGGASSERVALSDFKIRKAVDKASAKLFEHCCTGKH
IAKLKLNVNRAGGDKVTYLTIDMEEVVVSSVKFVAGGNQSGEDKAVSDLPVEEISFNFARIKTTYTQQNRTDGQAGGNIV
GGWDRTANKVFA*
Nucleotide sequence: 519 bp .
>EFF01837 NC_002947:c3478579-3478061 (Unknown) [Pseudomonas putida KT2440]
ATGGCATTTGACGCGTATATCCAAATCGACGGCATCCCAGGCGAAGTACTGGATGAAAAACACAAGGACTGGATCGAAGT
GCTGGGCTACGAGTACGGCGCCACCCAGGCTACGTCGGCAACCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTG
CCCTGAGCGACTTCAAGATCCGCAAGGCAGTCGACAAGGCATCGGCCAAACTGTTCGAACACTGCTGCACCGGCAAGCAC
ATCGCCAAGCTGAAGCTGAACGTGAACCGTGCCGGTGGCGACAAGGTCACCTACCTGACCATCGACATGGAAGAAGTGGT
GGTCTCTTCGGTCAAGTTTGTCGCCGGTGGCAACCAGAGTGGTGAAGACAAGGCGGTCAGCGACCTGCCCGTTGAAGAAA
TCAGCTTCAACTTTGCCCGCATCAAGACCACCTACACCCAGCAGAACCGCACCGACGGCCAGGCCGGCGGCAACATCGTG
GGTGGCTGGGACCGCACCGCGAACAAAGTGTTTGCCTAA
ATGGCATTTGACGCGTATATCCAAATCGACGGCATCCCAGGCGAAGTACTGGATGAAAAACACAAGGACTGGATCGAAGT
GCTGGGCTACGAGTACGGCGCCACCCAGGCTACGTCGGCAACCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTG
CCCTGAGCGACTTCAAGATCCGCAAGGCAGTCGACAAGGCATCGGCCAAACTGTTCGAACACTGCTGCACCGGCAAGCAC
ATCGCCAAGCTGAAGCTGAACGTGAACCGTGCCGGTGGCGACAAGGTCACCTACCTGACCATCGACATGGAAGAAGTGGT
GGTCTCTTCGGTCAAGTTTGTCGCCGGTGGCAACCAGAGTGGTGAAGACAAGGCGGTCAGCGACCTGCCCGTTGAAGAAA
TCAGCTTCAACTTTGCCCGCATCAAGACCACCTACACCCAGCAGAACCGCACCGACGGCCAGGCCGGCGGCAACATCGTG
GGTGGCTGGGACCGCACCGCGAACAAAGTGTTTGCCTAA