Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS13922  |
| T6SS type | Type i2 |
| Strain | Enterobacter sp. DSM 30060 |
| Replicon (RefSeq) | chromosome (NZ_CP056118) |
| Location | 4291538..4319959 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| HWQ15_RS20500 (dbpA) | 4286662..4288035 | - | 1374 | WP_022648261.1 | ATP-dependent RNA helicase DbpA | ||
| HWQ15_RS20505 | 4288093..4288245 | - | 153 | WP_154815129.1 | hypothetical protein | ||
| HWQ15_RS20510 (zntB) | 4288521..4289504 | - | 984 | WP_032624170.1 | zinc transporter ZntB | ||
| HWQ15_RS20515 | 4289595..4290725 | - | 1131 | WP_080454251.1 | chemoreceptor protein | ||
| HWQ15_RS20520 | 4291024..4291512 | - | 489 | WP_022648265.1 | hypothetical protein | ||
| T6CP207855 | TssA | HWQ15_RS20525 | 4291538..4292869 | - | 1332 | WP_063149586.1 | type VI secretion system ImpA and VasL domain-containing protein |
| T6CP207856 | TssE | HWQ15_RS20530 (tssE) | 4292893..4293348 | - | 456 | WP_022648267.1 | type VI secretion system baseplate subunit TssE |
| T6CP207857 | TssJ | HWQ15_RS20535 (tssJ) | 4293348..4293893 | - | 546 | WP_032624166.1 | type VI secretion system lipoprotein TssJ |
| T6CP207858 | TssG | HWQ15_RS20540 (tssG) | 4293871..4294956 | - | 1086 | WP_063149587.1 | type VI secretion system baseplate subunit TssG |
| T6CP207859 | TssF | HWQ15_RS20545 (tssF) | 4294920..4296674 | - | 1755 | WP_063149588.1 | type VI secretion system baseplate subunit TssF |
| T6CP207860 | TssA | HWQ15_RS20550 (tssA) | 4296716..4298317 | - | 1602 | WP_022648271.1 | type VI secretion system protein TssA |
| T6CP207861 | TssM | HWQ15_RS20555 | 4298317..4301760 | - | 3444 | WP_080454252.1 | type VI secretion protein VasK |
| HWQ15_RS20560 | 4301757..4302880 | - | 1124 | pseudogene | hypothetical protein | ||
| T6CP207862 | PAAR | HWQ15_RS20565 | 4302882..4303142 | - | 261 | WP_072049838.1 | PAAR domain-containing protein |
| HWQ15_RS20570 | 4303254..4304378 | - | 1125 | WP_063216465.1 | hypothetical protein | ||
| HWQ15_RS20575 | 4304422..4305551 | - | 1130 | pseudogene | hypothetical protein | ||
| HWQ15_RS20580 | 4305595..4306572 | - | 978 | pseudogene | hypothetical protein | ||
| HWQ15_RS20585 | 4306711..4308330 | - | 1620 | WP_063216467.1 | hypothetical protein | ||
| T6CP207863 | TssI | HWQ15_RS20590 (vgrG) | 4308334..4310835 | - | 2502 | WP_063149692.1 | type VI secretion system tip protein VgrG |
| T6CP207864 | TssH | HWQ15_RS20595 (tssH) | 4310832..4313477 | - | 2646 | WP_063149693.1 | type VI secretion system ATPase TssH |
| T6CP207865 | TssD | HWQ15_RS20600 | 4313650..4314141 | - | 492 | WP_009653685.1 | type VI secretion system effector Hcp |
| HWQ15_RS20605 | 4314147..4315853 | - | 1707 | WP_038416146.1 | OmpA family protein | ||
| T6CP207867 | TssL | HWQ15_RS20610 | 4315850..4316539 | - | 690 | WP_023300235.1 | type VI secretion system protein TssL, short form |
| T6CP207868 | TssK | HWQ15_RS20615 (tssK) | 4316536..4317876 | - | 1341 | WP_063149698.1 | type VI secretion system baseplate subunit TssK |
| T6CP207869 | TssC | HWQ15_RS20620 (tssC) | 4317892..4319427 | - | 1536 | WP_063945638.1 | type VI secretion system contractile sheath large subunit |
| T6CP207870 | TssB | HWQ15_RS20625 (tssB) | 4319468..4319959 | - | 492 | WP_023300236.1 | type VI secretion system contractile sheath small subunit |
| HWQ15_RS20630 | 4320571..4322187 | - | 1617 | WP_023300237.1 | peptide ABC transporter substrate-binding protein | ||
| HWQ15_RS20635 (mpaA) | 4322371..4323084 | + | 714 | WP_022648287.1 | murein tripeptide amidase MpaA | ||
| HWQ15_RS20640 (ycjG) | 4323075..4324040 | - | 966 | WP_063149441.1 | L-Ala-D/L-Glu epimerase | ||
| HWQ15_RS20645 (tpx) | 4324147..4324653 | + | 507 | WP_003856889.1 | thiol peroxidase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|