Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS13922  |
| T6SS type | Type i2 |
| Strain | Enterobacter sp. DSM 30060 |
| Replicon (RefSeq) | chromosome (NZ_CP056118) |
| Location | 4291538..4319959 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Loading, please wait
Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| HWQ15_RS20500 (dbpA) | 4286662..4288035 | - | 1374 | WP_022648261.1 | ATP-dependent RNA helicase DbpA | ||
| HWQ15_RS20505 | 4288093..4288245 | - | 153 | WP_154815129.1 | hypothetical protein | ||
| HWQ15_RS20510 (zntB) | 4288521..4289504 | - | 984 | WP_032624170.1 | zinc transporter ZntB | ||
| HWQ15_RS20515 | 4289595..4290725 | - | 1131 | WP_080454251.1 | chemoreceptor protein | ||
| HWQ15_RS20520 | 4291024..4291512 | - | 489 | WP_022648265.1 | hypothetical protein | ||
| T6CP207855 | TssA | HWQ15_RS20525 | 4291538..4292869 | - | 1332 | WP_063149586.1 | type VI secretion system ImpA and VasL domain-containing protein |
| T6CP207856 | TssE | HWQ15_RS20530 (tssE) | 4292893..4293348 | - | 456 | WP_022648267.1 | type VI secretion system baseplate subunit TssE |
| T6CP207857 | TssJ | HWQ15_RS20535 (tssJ) | 4293348..4293893 | - | 546 | WP_032624166.1 | type VI secretion system lipoprotein TssJ |
| T6CP207858 | TssG | HWQ15_RS20540 (tssG) | 4293871..4294956 | - | 1086 | WP_063149587.1 | type VI secretion system baseplate subunit TssG |
| T6CP207859 | TssF | HWQ15_RS20545 (tssF) | 4294920..4296674 | - | 1755 | WP_063149588.1 | type VI secretion system baseplate subunit TssF |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
Loading, please wait
Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||