Detailed information of component protein


Summary

Component ID T6CP207869
Component protein type TssC
T6SS ID (Type) T6SS13922 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (512 a.a.); Nucleotide sequence (1536 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS20620
Coordinate (Strand) 4317892..4319427 (-)
NCBI ID WP_063945638.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 4.2e-119 86..386
VipB_2 PF18945.2 3.4e-39 396..506
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-511 MSVNSETASAQGQTIVLEKEGVYASLFEKINLTPASSLGDINAFLDDAALSDAPAGERLTAAMQVFMDCIRKSGQPVEKLDKTLIDHHIAELDFQISRQLDAVMHHQAFQKVESLWRGLKQLVDNTDYRQNVKTEILDVSKDDLRQDFEDAPELIQSGLYWHTYTAEYDPPGGEPIGSVISSYEFDASPQDVALLRNISKVSAAAHMPFIGSVGPKFFLKDSMEEVAAIKDIGNYFDRAEYIKWKSFRDTDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSASFSFASNMVKSFINNGWCVQIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGFFRVKLFAVPHFQVEGMDVNLSLVSQMPKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9649 - -


  Protein sequence: 512 a.a.    

>T6CP207869 NZ_CP056118:c4319427-4317892 [Enterobacter sp. DSM 30060] [TssC]
MSVNSETASAQGQTIVLEKEGVYASLFEKINLTPASSLGDINAFLDDAALSDAPAGERLTAAMQVFMDCIRKSGQPVEKL
DKTLIDHHIAELDFQISRQLDAVMHHQAFQKVESLWRGLKQLVDNTDYRQNVKTEILDVSKDDLRQDFEDAPELIQSGLY
WHTYTAEYDPPGGEPIGSVISSYEFDASPQDVALLRNISKVSAAAHMPFIGSVGPKFFLKDSMEEVAAIKDIGNYFDRAE
YIKWKSFRDTDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSASFSFASNMVKSFINNGWCVQIR
GPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANS
RINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGF
FRVKLFAVPHFQVEGMDVNLSLVSQMPKAKA*

  Nucleotide sequence: 1536 bp    

>T6CP207869 NZ_CP056118:c4319427-4317892 [Enterobacter sp. DSM 30060] [TssC]
ATGTCTGTGAATAGTGAAACCGCCTCCGCGCAGGGGCAGACCATCGTACTGGAAAAAGAGGGCGTTTACGCCTCCCTGTT
TGAAAAAATCAACCTGACTCCGGCCTCGAGCCTGGGTGATATCAATGCGTTTCTGGATGATGCCGCGCTTTCTGACGCGC
CGGCGGGTGAACGCCTGACGGCGGCGATGCAGGTGTTTATGGACTGCATCCGCAAATCCGGTCAGCCCGTGGAGAAGCTC
GACAAAACGCTGATTGACCACCATATCGCCGAACTGGATTTCCAGATCAGCCGTCAGCTGGATGCCGTAATGCATCACCA
GGCGTTCCAGAAGGTGGAGTCCCTGTGGCGCGGCCTGAAGCAGCTGGTGGACAACACCGACTACCGCCAGAATGTGAAAA
CCGAGATTCTGGACGTCTCCAAGGACGACCTGCGCCAGGATTTTGAGGATGCACCGGAACTGATCCAGAGCGGCCTCTAC
TGGCACACCTATACCGCCGAATACGACCCCCCGGGCGGCGAGCCGATTGGCTCAGTGATTTCATCCTATGAATTTGACGC
CAGTCCCCAGGATGTGGCGCTGCTGCGCAACATCTCTAAAGTGTCAGCTGCCGCACATATGCCGTTTATTGGCTCTGTCG
GGCCGAAATTCTTCCTGAAAGACTCTATGGAAGAGGTTGCTGCGATTAAGGATATCGGCAACTACTTCGACCGCGCTGAA
TACATCAAGTGGAAATCCTTCCGCGATACTGACGACGCCCGCTACATCGGCCTCGTGATGCCGCGCGTGCTGGGGCGTCT
GCCGTATGGCCCGGACACCGTACCTGTACGCAGCTTTAACTACGTTGAGCAGGTGAAAGGCCCGGATCACGAGAAATACC
TGTGGACCAGCGCGTCGTTCTCCTTCGCGTCAAACATGGTGAAGAGCTTCATCAATAACGGCTGGTGCGTGCAGATCCGT
GGCCCGCAGGCGGGCGGGGCGGTGAAAGATCTGCCTATTCATCTGTACGATTTGGGTACCGGCAACCAGGTGAAAATCCC
GTCTGAGGTGATGATCCCGGAGACCCGCGAGTTTGAGTTTGCCAACCTCGGCTTTATTCCGCTCTCGTATTACAAAAACC
GCGACTATGCCTGCTTCTTCTCAGCGAACTCCGCGCAGAAACCGGCGCTGTACGACACCGCAGATGCCACGGCCAACAGC
CGCATCAATGCCCGTCTGCCGTACATCTTCCTGCTGTCGCGTATTGCGCACTATCTGAAGCTCATCCAGCGCGAGAACAT
CGGCACCACCAAGGACCGCCGTCTGCTGGAGCTGGAGCTGAATACCTGGGTGCGTAGTCTGGTGACGGAAATGACCGATC
CGGGCGATGAGTTGCAGGCTTCTCATCCGCTGCGTGACGCGAAGGTGGTGGTGGAAGATATCGAAGACAACCCGGGCTTC
TTCCGCGTGAAGCTGTTTGCGGTGCCGCACTTCCAGGTGGAAGGCATGGATGTGAACCTGTCTCTGGTGAGCCAGATGCC
GAAAGCGAAAGCGTAA