Detailed information of component protein


Summary

Component ID T6CP207855
Component protein type TssA
T6SS ID (Type) T6SS13922 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (444 a.a.); Nucleotide sequence (1332 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS20525
Coordinate (Strand) 4291538..4292869 (-)
NCBI ID WP_063149586.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 6.9e-41 295..438
ImpA_N PF06812.14 4.9e-21 9..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-443 MTINSERQLKTGGDPRTLADYAALREEMNKLTHPARPDVNWQHAETLCLSLFGHNGVELQTAAWYTLARTHLAGLYGMNEGLAVLAALVARQWGNLWPQPVHARIEILSALSKRLQQVVRTLSLTYADLGQLYQSEEHLSALGDVLQRMELKHATQLDALRTMMQNAAVRLEKSENTDMSLHGDALGATEIHLVEPTERSKWVYVVEPEPVLNVGVVKEPPVSMKPWKPFAAGMLTMLVAASVVAGGWQMLHAPDSAQAQLAAALAPLPQGLSTGQLEALQQTSPSPEPGIGRTQQLLAQLLQLKPDWAVSFGDRLVQQALTLWPEEAKPLAQHWQKQMSIAALADLDLNGWHQGMAQLQQLTNKLNALDEQKGKYMTVSELKSDVFAMSQSFSQTLPLEEQLRLLSTLPAGQPRSAAQQNKVEQHLQQLIVSYALLKHKKEQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9896 - -


  Protein sequence: 444 a.a.    

>T6CP207855 NZ_CP056118:c4292869-4291538 [Enterobacter sp. DSM 30060] [TssA]
MTINSERQLKTGGDPRTLADYAALREEMNKLTHPARPDVNWQHAETLCLSLFGHNGVELQTAAWYTLARTHLAGLYGMNE
GLAVLAALVARQWGNLWPQPVHARIEILSALSKRLQQVVRTLSLTYADLGQLYQSEEHLSALGDVLQRMELKHATQLDAL
RTMMQNAAVRLEKSENTDMSLHGDALGATEIHLVEPTERSKWVYVVEPEPVLNVGVVKEPPVSMKPWKPFAAGMLTMLVA
ASVVAGGWQMLHAPDSAQAQLAAALAPLPQGLSTGQLEALQQTSPSPEPGIGRTQQLLAQLLQLKPDWAVSFGDRLVQQA
LTLWPEEAKPLAQHWQKQMSIAALADLDLNGWHQGMAQLQQLTNKLNALDEQKGKYMTVSELKSDVFAMSQSFSQTLPLE
EQLRLLSTLPAGQPRSAAQQNKVEQHLQQLIVSYALLKHKKEQ*

  Nucleotide sequence: 1332 bp    

>T6CP207855 NZ_CP056118:c4292869-4291538 [Enterobacter sp. DSM 30060] [TssA]
ATGACAATAAATTCTGAACGCCAACTTAAAACCGGCGGGGATCCGCGCACGCTTGCGGATTACGCTGCCTTGCGCGAAGA
AATGAACAAGCTCACCCATCCGGCACGTCCGGATGTGAACTGGCAACACGCGGAAACGCTCTGTCTGTCACTGTTCGGGC
ATAACGGTGTGGAGCTACAAACGGCTGCCTGGTATACGCTCGCCCGTACGCATCTGGCCGGATTGTACGGTATGAATGAG
GGGCTTGCGGTACTTGCTGCGCTGGTAGCCCGCCAGTGGGGAAACCTCTGGCCACAGCCTGTCCATGCGCGAATCGAAAT
CCTTAGTGCACTCAGCAAGCGACTGCAACAGGTAGTACGAACGCTATCGCTGACGTACGCTGACTTAGGGCAGCTGTATC
AGTCTGAAGAGCATCTGAGCGCTTTGGGGGACGTCTTGCAGCGTATGGAACTCAAGCATGCTACTCAGCTTGATGCTCTG
CGCACGATGATGCAGAACGCAGCAGTGCGTCTGGAAAAGAGCGAAAATACGGACATGAGTCTGCACGGTGACGCATTGGG
TGCTACGGAAATTCACCTCGTCGAACCGACTGAGCGTAGTAAATGGGTTTATGTGGTTGAGCCCGAGCCGGTGCTGAACG
TTGGGGTGGTTAAAGAACCTCCGGTGTCGATGAAACCCTGGAAGCCATTTGCTGCTGGTATGTTGACCATGCTGGTGGCA
GCCAGTGTCGTCGCAGGAGGATGGCAGATGTTGCATGCGCCAGATTCGGCACAAGCGCAGCTAGCCGCGGCTCTGGCTCC
TCTACCTCAAGGGCTATCTACAGGGCAATTAGAGGCGCTGCAACAAACGTCACCGTCACCGGAACCGGGGATTGGCAGGA
CACAACAGCTGTTAGCGCAGCTTTTACAGTTGAAACCAGACTGGGCAGTGAGCTTCGGCGACCGTCTGGTGCAGCAGGCG
CTGACGCTGTGGCCGGAAGAGGCCAAACCCCTGGCGCAACATTGGCAGAAACAGATGAGTATCGCTGCGCTAGCAGATTT
AGATCTGAATGGATGGCATCAGGGTATGGCGCAGTTGCAGCAGTTGACGAACAAGCTGAACGCACTGGATGAACAGAAGG
GGAAGTACATGACGGTGAGTGAACTAAAATCAGACGTTTTTGCCATGTCGCAGTCATTTAGCCAAACCCTACCGCTTGAG
GAGCAGCTTCGTCTGCTTTCCACTCTACCTGCCGGGCAACCCCGGTCAGCAGCGCAGCAAAACAAGGTCGAACAACATCT
TCAGCAGTTGATTGTTAGCTACGCCCTGCTGAAGCACAAAAAAGAACAATAA