Detailed information of component protein


Summary

Component ID T6CP207859
Component protein type TssF
T6SS ID (Type) T6SS13922 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (585 a.a.); Nucleotide sequence (1755 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS20545
Coordinate (Strand) 4294920..4296674 (-)
NCBI ID WP_063149588.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.1e-180 1..580
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-584 MDDLTLRYYDAEMRYLLEAGEEFARAHPEQAAMLNLDKAGARDPYVERLFEGFAFLMGRLREKLDDDLPELTEGLVSLLWPHYLRTIPSMSVVEFTPVWREMKEPMRIARGFEVNSRPIGEKGTRCRYTTTKEITLQPLALEHARLSTDPDGRSVISLRFSCSHLADWSRVDLSQIPFYFNADAPLACAMHEAFTMNTARLWLRMPGDVDRRPMDGYFTALGFGDDDRLWPKGDSSFSGYQLLLEYFTFREKFMFMGLRGLEAVIFPSELSWFEIDVVLAERWEHDFSFTEKHLRLNCVPVINLFPLESDPLTLNSLQTEYMLRPMRVQDGHTEIYTVDSVMSSSQHTYVPFSSFRHKGGMMRHEAPEYYYHTRVRRGPSGLHNTWLILGGEAFDNHTVPEDESLSLTLTGTNGQLPRRALQSTVLDTVMKTTSVSIAVRNLCAPTLPCYPPAQDRFHWRVLSHLGSGFLSMMDNADVLRGTLALYEWTDSEMNRRRLEAIIDVKHSETERFEQGYLVRGVQIEVTLDSHGFAGRGDICLFGEMLSRFFALYTDIYLFNRLIIILQPTGERLEWEEKHNRRIPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9977 - -


  Protein sequence: 585 a.a.    

>T6CP207859 NZ_CP056118:c4296674-4294920 [Enterobacter sp. DSM 30060] [TssF]
MDDLTLRYYDAEMRYLLEAGEEFARAHPEQAAMLNLDKAGARDPYVERLFEGFAFLMGRLREKLDDDLPELTEGLVSLLW
PHYLRTIPSMSVVEFTPVWREMKEPMRIARGFEVNSRPIGEKGTRCRYTTTKEITLQPLALEHARLSTDPDGRSVISLRF
SCSHLADWSRVDLSQIPFYFNADAPLACAMHEAFTMNTARLWLRMPGDVDRRPMDGYFTALGFGDDDRLWPKGDSSFSGY
QLLLEYFTFREKFMFMGLRGLEAVIFPSELSWFEIDVVLAERWEHDFSFTEKHLRLNCVPVINLFPLESDPLTLNSLQTE
YMLRPMRVQDGHTEIYTVDSVMSSSQHTYVPFSSFRHKGGMMRHEAPEYYYHTRVRRGPSGLHNTWLILGGEAFDNHTVP
EDESLSLTLTGTNGQLPRRALQSTVLDTVMKTTSVSIAVRNLCAPTLPCYPPAQDRFHWRVLSHLGSGFLSMMDNADVLR
GTLALYEWTDSEMNRRRLEAIIDVKHSETERFEQGYLVRGVQIEVTLDSHGFAGRGDICLFGEMLSRFFALYTDIYLFNR
LIIILQPTGERLEWEEKHNRRIPG*

  Nucleotide sequence: 1755 bp    

>T6CP207859 NZ_CP056118:c4296674-4294920 [Enterobacter sp. DSM 30060] [TssF]
ATGGATGATTTAACCCTGCGTTATTACGACGCTGAAATGCGCTACCTGCTGGAAGCCGGCGAAGAATTTGCCCGCGCTCA
CCCTGAGCAGGCTGCAATGCTCAATCTCGATAAGGCGGGCGCGCGCGACCCGTACGTGGAGCGCCTGTTCGAGGGCTTTG
CCTTCCTGATGGGCCGCCTGCGCGAGAAGCTTGACGACGATCTGCCGGAACTGACCGAAGGGCTGGTCAGCCTGTTGTGG
CCGCATTACCTGCGCACCATTCCCTCGATGTCGGTGGTGGAGTTCACTCCTGTCTGGCGTGAGATGAAAGAACCGATGCG
TATCGCCAGAGGTTTCGAGGTCAATTCGCGGCCGATCGGTGAAAAAGGCACGCGTTGTCGCTACACCACAACTAAAGAGA
TAACCCTTCAGCCACTGGCGTTGGAGCATGCCCGCCTGTCGACTGATCCTGACGGGCGCTCTGTCATCAGCCTGCGCTTC
AGTTGTAGCCATCTTGCTGACTGGAGCCGTGTCGATCTCAGCCAGATCCCGTTCTATTTCAATGCTGACGCACCGCTGGC
CTGCGCTATGCATGAAGCTTTTACCATGAATACGGCGCGTCTGTGGCTGCGCATGCCAGGTGACGTAGACAGAAGGCCGA
TGGACGGGTATTTCACCGCACTGGGGTTTGGTGATGATGACAGGCTGTGGCCGAAGGGGGACAGCAGTTTCAGCGGTTAC
CAGTTGCTGCTGGAGTACTTCACCTTCCGCGAGAAATTTATGTTCATGGGGCTGCGCGGGCTGGAGGCCGTGATCTTTCC
TTCTGAGCTTTCTTGGTTTGAAATCGACGTGGTGCTGGCGGAACGCTGGGAGCATGACTTCAGCTTTACCGAAAAGCACC
TGCGCCTGAATTGCGTGCCGGTCATTAACCTGTTTCCGCTGGAATCCGATCCGCTGACGCTCAATTCTCTGCAAACCGAA
TACATGCTGCGCCCGATGCGCGTGCAGGATGGCCATACCGAGATATATACCGTGGATTCGGTGATGTCGTCGAGTCAGCA
TACCTACGTGCCGTTTTCGAGCTTCCGTCATAAGGGAGGAATGATGCGTCATGAAGCACCGGAATATTACTACCACACCC
GCGTGCGCCGCGGTCCGTCCGGCCTGCATAACACCTGGCTCATTCTTGGCGGCGAAGCATTTGATAATCATACCGTCCCG
GAAGACGAAAGCCTGTCGCTGACGCTCACCGGCACAAACGGTCAACTGCCACGACGTGCGCTGCAAAGCACCGTGCTTGA
TACGGTGATGAAAACCACTTCGGTCAGCATTGCCGTGCGCAACCTGTGCGCGCCGACGCTACCTTGTTACCCACCGGCGC
AGGACCGTTTCCACTGGCGCGTGCTGAGTCACCTTGGCAGCGGATTTCTGTCGATGATGGATAATGCCGACGTGCTGCGC
GGTACCCTGGCGCTGTATGAATGGACCGACAGCGAGATGAACCGTCGCCGCCTGGAAGCCATCATTGACGTGAAGCACAG
TGAAACCGAACGCTTTGAGCAGGGCTATCTGGTGCGCGGCGTGCAGATTGAGGTGACCCTGGACAGCCATGGCTTTGCCG
GGCGCGGTGACATCTGCCTGTTTGGCGAGATGCTGAGTCGTTTCTTTGCGCTCTACACCGACATTTATCTGTTTAACCGA
CTGATTATCATCCTGCAACCTACCGGAGAGCGCCTGGAATGGGAAGAGAAGCACAATCGCCGTATTCCCGGCTGA