SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP207860
Component protein type	TssA
T6SS ID (Type)	T6SS13922 (Type i2)
Strain	Enterobacter sp. DSM 30060
Replicon	chromosome
Sequence	Protein sequence (534 a.a.); Nucleotide sequence (1602 bp)
Reference	-

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	HWQ15_RS20550
Coordinate (Strand)	4296716..4298317 (-)
NCBI ID	WP_022648271.1
RefSeq	NZ_CP056118
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VasJ	PF16989.7	1.1e-70	231..489
ImpA_N	PF06812.14	1.1e-23	33..138

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-533	MDALQNLVVACQADETLLRQQAQSHSESWQRWLTPISENNPTGEDPGYDDDFQRIREEVNKLSSIDTGLICQLAEKVLNTVAKDVRVATYYCWARLHQDGETGFAEGLELLAGLLTRYGKQLHPQRERSRKPALEWLAGSRLLDSLLLWPEVVRDDAQRTTGALLLIRDSLETEPEASRPDLSALYSALGSRLMKAGGVDAVIPQNASSKTRAQWASHAAEQDAPVLSHITSGQDLLAQARTLTGYLREQPDGWLAAHRLMKSLRHDTLRSIPAPDAEGKTRIEPPRADQRAMLKRLYLQQSWLEILEQADSTFSRGANHLWLDLQWYIHQALIKSGQDVLADIIIADLKGLLRRLPGLETLAFNDGTPFADEVTLNWINQSVQDEMSNWRDEPVNALSETGNDILALEPEALEKADTDGLDATLHWLQTRPGTDTTKDKWLVRLLMARVAEQKGKNELALHLLGELDGAAQAITLTQWTPALMFEVKSRRLRLLRMKAARSETDKSRLQPEMDQLLAGLIALDPAGCAVLCG

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9526	-	-

Protein sequence: 534 a.a.

						>T6CP207860 NZ_CP056118:c4298317-4296716 [Enterobacter sp. DSM 30060] [TssA]
MDALQNLVVACQADETLLRQQAQSHSESWQRWLTPISENNPTGEDPGYDDDFQRIREEVNKLSSIDTGLICQLAEKVLNT
VAKDVRVATYYCWARLHQDGETGFAEGLELLAGLLTRYGKQLHPQRERSRKPALEWLAGSRLLDSLLLWPEVVRDDAQRT
TGALLLIRDSLETEPEASRPDLSALYSALGSRLMKAGGVDAVIPQNASSKTRAQWASHAAEQDAPVLSHITSGQDLLAQA
RTLTGYLREQPDGWLAAHRLMKSLRHDTLRSIPAPDAEGKTRIEPPRADQRAMLKRLYLQQSWLEILEQADSTFSRGANH
LWLDLQWYIHQALIKSGQDVLADIIIADLKGLLRRLPGLETLAFNDGTPFADEVTLNWINQSVQDEMSNWRDEPVNALSE
TGNDILALEPEALEKADTDGLDATLHWLQTRPGTDTTKDKWLVRLLMARVAEQKGKNELALHLLGELDGAAQAITLTQWT
PALMFEVKSRRLRLLRMKAARSETDKSRLQPEMDQLLAGLIALDPAGCAVLCG*					

Nucleotide sequence: 1602 bp

						>T6CP207860 NZ_CP056118:c4298317-4296716 [Enterobacter sp. DSM 30060] [TssA]
ATGGACGCTTTGCAGAATCTGGTTGTTGCCTGCCAGGCAGATGAAACCCTGCTGCGACAGCAGGCGCAGTCACATTCCGA
AAGCTGGCAGCGCTGGCTTACCCCGATCAGTGAGAACAATCCTACAGGAGAAGACCCGGGTTATGACGATGATTTCCAGC
GTATCCGGGAGGAGGTCAATAAACTTTCCAGTATTGATACCGGGCTGATTTGCCAGCTGGCTGAAAAGGTGTTGAACACT
GTGGCCAAAGATGTCCGGGTTGCTACTTACTATTGTTGGGCGCGCTTGCACCAGGACGGTGAAACCGGGTTTGCTGAAGG
GCTTGAGCTACTTGCGGGATTACTAACGCGCTATGGAAAGCAGCTTCACCCACAGCGAGAGCGAAGCCGTAAACCAGCAC
TGGAGTGGCTCGCAGGCTCTCGTCTGCTTGACAGCCTGTTACTCTGGCCAGAAGTGGTACGCGACGATGCCCAGCGTACG
ACCGGTGCGTTGCTTCTCATCCGAGACAGTCTTGAAACTGAGCCTGAAGCGTCACGTCCAGATCTGAGTGCCCTGTACAG
CGCGCTGGGTTCCCGCCTGATGAAAGCCGGTGGCGTGGATGCGGTAATACCCCAGAACGCCAGCAGTAAAACACGCGCGC
AGTGGGCATCTCACGCGGCAGAACAGGACGCGCCAGTGCTGAGCCACATCACGTCAGGTCAGGATTTGCTGGCTCAGGCC
CGAACCCTGACGGGATATCTGCGTGAGCAACCCGATGGCTGGCTTGCCGCACACCGACTGATGAAAAGTCTGCGTCACGA
CACGCTGCGATCGATCCCGGCACCGGATGCCGAAGGGAAAACGCGCATCGAACCGCCGAGGGCTGACCAGCGGGCAATGC
TCAAACGGCTGTATTTGCAACAGAGCTGGCTGGAGATACTGGAACAAGCGGACAGCACTTTCTCGCGTGGCGCCAATCAT
CTCTGGCTAGATTTGCAGTGGTACATCCATCAGGCCCTGATTAAATCAGGCCAGGATGTGCTGGCCGATATCATTATCGC
TGACCTGAAAGGGCTGCTGCGGCGCCTTCCCGGACTTGAAACGCTGGCCTTCAATGACGGCACACCCTTTGCTGATGAGG
TCACGCTGAACTGGATAAACCAGAGCGTGCAGGACGAGATGTCCAACTGGCGGGATGAGCCTGTCAATGCCTTGAGTGAA
ACTGGCAACGATATTCTGGCCCTTGAACCGGAAGCTTTGGAGAAAGCTGACACGGATGGTCTGGATGCCACACTCCACTG
GCTGCAAACGCGCCCGGGCACCGACACCACAAAAGACAAATGGTTGGTGCGTCTGCTAATGGCCCGCGTGGCGGAGCAGA
AGGGTAAGAATGAGCTGGCTCTTCATCTGCTGGGTGAGCTTGACGGTGCAGCACAGGCCATCACCCTCACGCAATGGACG
CCAGCATTGATGTTTGAAGTGAAATCGCGCCGCCTCAGGCTGCTGCGCATGAAAGCCGCCCGCAGCGAAACCGATAAGTC
ACGGCTTCAGCCAGAGATGGACCAGCTTCTGGCGGGCCTGATTGCGCTTGACCCGGCAGGCTGTGCGGTGCTTTGCGGGT
AA					