Detailed information of component protein


Summary

Component ID T6CP207863
Component protein type TssI
T6SS ID (Type) T6SS13922 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (834 a.a.); Nucleotide sequence (2502 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS20590
Coordinate (Strand) 4308334..4310835 (-)
NCBI ID WP_063149692.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.8e-53 34..355
DUF2345 PF10106.11 1.3e-48 613..759
T6SS_Vgr PF13296.8 3.2e-36 493..594
Phage_base_V PF04717.14 1.3e-09 407..474
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-833 MSSNLPLRFSHSHHLLSVKGCDAGLDVLAFEGDEALSTPFSYRTEFTSADHAISKEMMLMKAASLTLQAPVDQGYGIKIQQPVRVIQGVVTGFERLSTSKDETRYALTLEPRLALLDRSHQNAIYQDMSVPQIVEKILRERHGMRGQDFLFSLSKEYPRREQVMQYAEDDLHFITRLLGEVGIWFRFTTDTRLSIDVVEFYDSQQGYEKGLTLPSVPPSGQHSKGVDSVWGMECHHNVVQKQVSTLDYNYRQATQDMNTRVDATGGDTTTYGDAYHWADNYLTPGSAYDRNPAAESGAFYARIRHERYLNGQTQTVAFTSCPALSPGMRLKVTGGYEVAEVFTQGVVVTAMHSHARRDADFCVRFDGIPDSADFCFRPAPGRRPVMAGTLPARVTSTTENDTYGHIDKDGRYRVNMLFDRENWETGFESLWVRQSRPYAGDTYGLHLPLLAGTEVAIGFEDGNPDRPYIAGVLHDSAHGDHVTIRNYKRNVLRTPANNKIRLDDERGKEHIKVSTEYGGKSQLNLGHLVDSEKQQRGEGFELRTDSWGAIRAQKGIFISADGQARAQGQVLEMQAAMSQLEQARSLAEALRSAAEAARAELADVQTQKALLSEALTDLKKAALLVSAPEGIAQVTGKSLQQSAGDNIISTSGGHTDFSALKRFTVAAGERVSLFAQKLGIKMFAGKGKVEIQAQGDEMTLDALKDIRISSSEGKLIISAKQEIVLTSGGGYIRIADGTVECAAPDKIIERGAVWQKFGGQSFSQAVQKWESSAFEMGPEVLWPYSETPVAGQKISLTHSDGTVQELKTSADGRGEKQNLVDPASVQINLKDED


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9655 - -


  Protein sequence: 834 a.a.    

>T6CP207863 NZ_CP056118:c4310835-4308334 [Enterobacter sp. DSM 30060] [TssI]
MSSNLPLRFSHSHHLLSVKGCDAGLDVLAFEGDEALSTPFSYRTEFTSADHAISKEMMLMKAASLTLQAPVDQGYGIKIQ
QPVRVIQGVVTGFERLSTSKDETRYALTLEPRLALLDRSHQNAIYQDMSVPQIVEKILRERHGMRGQDFLFSLSKEYPRR
EQVMQYAEDDLHFITRLLGEVGIWFRFTTDTRLSIDVVEFYDSQQGYEKGLTLPSVPPSGQHSKGVDSVWGMECHHNVVQ
KQVSTLDYNYRQATQDMNTRVDATGGDTTTYGDAYHWADNYLTPGSAYDRNPAAESGAFYARIRHERYLNGQTQTVAFTS
CPALSPGMRLKVTGGYEVAEVFTQGVVVTAMHSHARRDADFCVRFDGIPDSADFCFRPAPGRRPVMAGTLPARVTSTTEN
DTYGHIDKDGRYRVNMLFDRENWETGFESLWVRQSRPYAGDTYGLHLPLLAGTEVAIGFEDGNPDRPYIAGVLHDSAHGD
HVTIRNYKRNVLRTPANNKIRLDDERGKEHIKVSTEYGGKSQLNLGHLVDSEKQQRGEGFELRTDSWGAIRAQKGIFISA
DGQARAQGQVLEMQAAMSQLEQARSLAEALRSAAEAARAELADVQTQKALLSEALTDLKKAALLVSAPEGIAQVTGKSLQ
QSAGDNIISTSGGHTDFSALKRFTVAAGERVSLFAQKLGIKMFAGKGKVEIQAQGDEMTLDALKDIRISSSEGKLIISAK
QEIVLTSGGGYIRIADGTVECAAPDKIIERGAVWQKFGGQSFSQAVQKWESSAFEMGPEVLWPYSETPVAGQKISLTHSD
GTVQELKTSADGRGEKQNLVDPASVQINLKDED*

  Nucleotide sequence: 2502 bp    

>T6CP207863 NZ_CP056118:c4310835-4308334 [Enterobacter sp. DSM 30060] [TssI]
ATGAGCAGTAATCTTCCCTTACGATTCAGCCACAGCCATCACCTGCTTTCGGTGAAGGGCTGCGATGCAGGGCTTGATGT
GCTGGCTTTTGAGGGCGATGAAGCCCTGAGCACACCGTTCAGCTACCGTACTGAATTCACCAGCGCGGATCATGCCATCA
GCAAAGAGATGATGCTGATGAAAGCGGCTTCCCTGACGCTACAGGCCCCGGTAGACCAGGGTTACGGTATCAAAATACAG
CAGCCGGTGCGGGTGATTCAGGGCGTGGTGACCGGTTTTGAACGCCTCAGCACGTCAAAAGATGAAACCCGCTACGCCCT
GACGCTTGAGCCGCGTCTGGCGCTGCTCGACCGCTCGCACCAGAACGCGATTTACCAGGACATGTCGGTTCCGCAAATCG
TGGAAAAAATCCTGCGCGAACGTCACGGCATGCGCGGCCAGGACTTCCTGTTCTCACTGAGTAAAGAGTATCCACGCCGT
GAGCAGGTGATGCAGTACGCTGAGGACGACCTGCACTTTATCACCCGCCTGCTGGGTGAGGTCGGTATATGGTTCCGCTT
CACCACCGACACGCGCCTCAGCATTGACGTGGTGGAGTTTTATGACAGCCAGCAGGGGTATGAGAAAGGCCTGACGCTGC
CGTCTGTACCGCCATCGGGCCAGCATTCAAAAGGCGTGGATTCAGTCTGGGGAATGGAATGCCATCACAATGTGGTGCAG
AAGCAGGTCAGCACCCTGGACTACAACTACCGTCAGGCCACGCAGGACATGAACACCCGGGTTGACGCGACCGGCGGGGA
TACCACCACGTACGGTGATGCCTACCACTGGGCGGATAACTACCTGACGCCGGGCAGCGCGTATGACCGCAACCCGGCAG
CGGAGTCCGGGGCGTTTTACGCCCGCATCCGGCATGAGCGCTACCTGAATGGCCAGACGCAGACCGTTGCCTTCACCAGC
TGCCCGGCCCTTTCACCGGGTATGCGGCTGAAAGTCACCGGCGGGTACGAAGTGGCGGAGGTGTTTACCCAGGGCGTCGT
GGTCACGGCGATGCACAGCCATGCCCGGCGTGATGCCGACTTTTGCGTCAGGTTTGACGGTATCCCGGACAGCGCGGATT
TTTGCTTCCGCCCGGCGCCAGGCCGCCGCCCGGTGATGGCCGGTACCTTACCGGCACGCGTCACCAGCACCACCGAAAAT
GACACCTACGGGCATATCGACAAGGACGGTCGCTATCGCGTCAATATGCTGTTTGACCGTGAGAACTGGGAGACCGGGTT
CGAGAGCCTGTGGGTCCGTCAGTCCCGCCCGTATGCGGGGGACACCTACGGCCTGCACCTGCCGCTGCTGGCAGGCACCG
AGGTGGCGATTGGTTTTGAGGACGGCAACCCGGACCGGCCGTATATTGCCGGTGTGCTGCACGACTCGGCGCACGGCGAC
CATGTCACCATCCGGAACTACAAACGCAACGTCCTGCGCACGCCAGCGAACAACAAAATCCGCCTCGATGACGAGCGCGG
GAAAGAGCATATCAAGGTCAGCACGGAATACGGCGGCAAGAGCCAGCTGAACCTCGGCCACCTGGTCGACAGCGAGAAAC
AGCAGCGCGGTGAGGGATTTGAGCTCAGGACGGACAGCTGGGGTGCGATACGGGCGCAGAAAGGGATATTTATCAGTGCC
GACGGCCAGGCCAGGGCGCAGGGGCAGGTGCTGGAAATGCAGGCGGCGATGAGCCAGCTGGAGCAGGCGCGGTCACTGGC
TGAAGCGTTACGCAGCGCGGCAGAGGCGGCGAGGGCTGAGCTGGCAGATGTGCAGACGCAGAAGGCGCTGCTGTCAGAGG
CGCTGACGGATTTAAAGAAAGCGGCGTTGCTGGTCTCAGCCCCGGAAGGGATAGCGCAGGTGACAGGGAAAAGCCTGCAG
CAGTCGGCGGGAGACAACATCATCAGCACCAGCGGCGGGCACACAGATTTCAGCGCACTGAAAAGATTCACCGTGGCGGC
CGGGGAGCGGGTAAGTCTGTTTGCGCAAAAGCTGGGCATCAAAATGTTTGCCGGCAAAGGAAAGGTGGAGATCCAGGCGC
AGGGAGATGAGATGACGCTGGATGCGCTGAAGGATATCCGCATCAGCAGCAGTGAGGGAAAACTCATCATCAGCGCGAAG
CAGGAGATAGTGCTGACGAGCGGCGGAGGATATATCCGGATAGCGGACGGAACGGTGGAGTGTGCGGCGCCGGACAAAAT
CATCGAGCGCGGGGCGGTGTGGCAGAAGTTTGGTGGACAGAGCTTTAGTCAGGCGGTCCAGAAGTGGGAAAGCAGCGCAT
TTGAAATGGGACCTGAAGTGCTGTGGCCCTATTCTGAGACACCCGTAGCGGGTCAGAAAATCAGCCTGACGCACAGTGAT
GGTACCGTGCAGGAGTTAAAGACTTCTGCGGACGGCCGTGGGGAGAAGCAAAACTTGGTGGATCCTGCATCAGTGCAGAT
AAACCTGAAGGATGAGGACTAA