Detailed information of component protein


Summary

Component ID T6CP207868
Component protein type TssK
T6SS ID (Type) T6SS13922 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS20615
Coordinate (Strand) 4316536..4317876 (-)
NCBI ID WP_063149698.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5e-136 18..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MKTEQPLWGRGQMVSPQHFQQQAAYAAWSAECIARLGLSHPWGVIEATFEPDALKLGRLQARHLHIRFPDGTLIDTDNADDLPPVLALESESNEVVVMLALPLLRANGGNCLKPDEVAGRPVRYRQRWQDIRNTFGDDTRQIAVMRPELTLRFAHQNNSDYLTCPVARLQQDLQGAWQPDETFLPPLLAIQGSRWLLTQLEQLMIQLRVRLSRLMAMRRESNERMADFAVADVSLFWLLNALNSAEPVLGQFQRHPQSPPERLYPELARLAGSLLTFSLEHQVSAIPVWQHEQLNNVFPSLFDLLGDLLEASLPSRVVAIELEHDARLHFWQARLHDPRLREGADYYLSVRSMVPVAQLQEQFPRQCKVGSPDHVRSIVNSSRVGVPLTPLRHVPAAIPLRLENQYFSLDVSHPQATEMLQGGTCMFYVPGMLGEPELELFAVLRT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9765 - -


  Protein sequence: 447 a.a.    

>T6CP207868 NZ_CP056118:c4317876-4316536 [Enterobacter sp. DSM 30060] [TssK]
MKTEQPLWGRGQMVSPQHFQQQAAYAAWSAECIARLGLSHPWGVIEATFEPDALKLGRLQARHLHIRFPDGTLIDTDNAD
DLPPVLALESESNEVVVMLALPLLRANGGNCLKPDEVAGRPVRYRQRWQDIRNTFGDDTRQIAVMRPELTLRFAHQNNSD
YLTCPVARLQQDLQGAWQPDETFLPPLLAIQGSRWLLTQLEQLMIQLRVRLSRLMAMRRESNERMADFAVADVSLFWLLN
ALNSAEPVLGQFQRHPQSPPERLYPELARLAGSLLTFSLEHQVSAIPVWQHEQLNNVFPSLFDLLGDLLEASLPSRVVAI
ELEHDARLHFWQARLHDPRLREGADYYLSVRSMVPVAQLQEQFPRQCKVGSPDHVRSIVNSSRVGVPLTPLRHVPAAIPL
RLENQYFSLDVSHPQATEMLQGGTCMFYVPGMLGEPELELFAVLRT*

  Nucleotide sequence: 1341 bp    

>T6CP207868 NZ_CP056118:c4317876-4316536 [Enterobacter sp. DSM 30060] [TssK]
ATGAAAACGGAACAACCGTTATGGGGCAGGGGCCAGATGGTCTCTCCCCAGCACTTCCAGCAACAGGCCGCGTATGCGGC
CTGGTCTGCGGAATGCATCGCCCGGTTAGGTCTCTCCCATCCCTGGGGAGTGATTGAAGCCACTTTCGAACCGGATGCAC
TGAAACTGGGCCGCCTGCAGGCCCGCCATCTGCACATCCGTTTCCCCGACGGGACGCTTATCGACACGGATAATGCTGAC
GATCTGCCACCGGTTCTGGCGCTGGAGAGTGAATCAAATGAGGTGGTAGTGATGCTCGCGCTTCCGCTGCTGCGCGCGAA
TGGTGGCAACTGTCTTAAGCCCGATGAGGTAGCCGGGCGTCCTGTTCGCTATCGCCAGCGTTGGCAGGATATCCGCAATA
CCTTCGGGGACGATACCCGCCAGATTGCGGTAATGCGTCCTGAGCTGACGCTGCGGTTTGCACATCAGAACAACAGCGAT
TACCTGACCTGTCCGGTTGCCCGCCTGCAGCAGGATCTGCAGGGGGCGTGGCAGCCTGATGAGACGTTTCTCCCCCCGCT
CCTGGCCATCCAGGGCAGCCGCTGGCTGTTAACCCAGCTCGAACAGCTGATGATCCAGCTACGTGTACGCCTGAGCCGAC
TGATGGCCATGCGACGGGAAAGTAATGAGCGCATGGCAGACTTTGCCGTGGCCGACGTGTCGCTGTTCTGGTTGCTGAAT
GCCCTCAACAGCGCTGAGCCCGTGCTGGGGCAATTTCAGCGCCATCCGCAAAGTCCGCCTGAACGCCTGTATCCGGAGCT
GGCCCGCCTGGCGGGCAGCCTGCTGACCTTCTCGCTGGAGCACCAGGTGAGTGCGATCCCGGTCTGGCAGCACGAGCAAC
TGAATAACGTATTTCCGTCGCTGTTTGATTTACTGGGGGACCTTCTGGAAGCCAGTCTGCCATCGCGGGTGGTGGCGATT
GAGCTTGAGCACGATGCCCGGCTGCACTTCTGGCAGGCCCGTCTGCATGATCCGCGTCTGCGTGAAGGGGCGGATTACTA
CCTCTCCGTGCGTTCAATGGTGCCGGTGGCTCAGCTGCAGGAGCAGTTCCCGCGCCAGTGCAAGGTTGGCAGCCCCGATC
ATGTCAGAAGTATCGTCAATTCATCGCGGGTGGGCGTGCCGCTGACCCCGCTGCGCCATGTGCCGGCAGCCATTCCGTTA
CGTCTGGAAAATCAGTATTTCAGTCTTGATGTCTCTCATCCTCAGGCCACTGAAATGCTCCAGGGCGGCACCTGCATGTT
TTACGTTCCGGGCATGCTCGGCGAGCCTGAGCTCGAACTCTTTGCGGTGCTGAGAACATGA