Detailed information of component protein


Summary

Component ID T6CP207861
Component protein type TssM
T6SS ID (Type) T6SS13922 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (1148 a.a.); Nucleotide sequence (3444 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS20555
Coordinate (Strand) 4298317..4301760 (-)
NCBI ID WP_080454252.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 4.2e-62 422..739
IcmF_C PF06744.14 5.3e-21 998..1102
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-11 MTQKKELQSAR
Transmembrane helix 12-34 YGFWGYFILIIGLAGITAFLLFI
Outside 35-48 NQDALLKYGLAYRQ
Transmembrane helix 49-71 IMSVWGGVFCFLFLGTVCSPFYW
Inside 72-373 RRKQRKKQRNYLPPDSSGAETKTNPDVMTTITDYTDLKQHLNLRYRVFWRRKVRLLLITGDEAAIEQLVPGLQQQQWLEGNRTVLIYGGSLASEPDREKYTALRKLRRGRPLDGIIRVLPESPKLTPHISDSDLRGLEKISELLRYSAPVWLWQLCSSHWSQGTRPEQAVGASFPPRAKEDDVIRQLELMLPALRAQGMSQVAENSSHDFLLRLSQHLNDGAIARWAQQLQPWFFVSQQRVPLRGLMFSLSEKKPAGMSAGTADAENYGSQRHALTLPATWQGIVDDCTRVRGRRVGMPWER
Transmembrane helix 374-396 ALAWSLMAIISVWGGGMLLSFAV
Outside 397-1147 NRSQIVSVAQQAHALVEHPSVSDYQLTALHALRNDAGRLLHHIQDGAPWYQRFGLNHDQQLLDALLPWYGVANNRLIRDPANEALKQKLIALVNSAPNSDQRTQMAKPGYDQLKAWLMMSRPDKADGAFYAQTMKTVQPTRLGISTGLWQSLSPDLWAFYITELPKQPLWKTTPDAQLVSQSRQVLLQQIGRRNAESTLYENMLKSVRRNFADVSLEDMTGGTDARRLFTTDEVVPGMFTRQAWEGGIQQAIEKAANSRRDEIDWVLSDSRKTVSSDLSPEALKARLTERYFTDFAGSWLSFLNSLQLNPANNIADVTDQLTLMSDVRQSPLIALMNTLAWQGQAGQKSEGLSDSIIKSAKDLVGGKDKPVIDQSASGPQGPLDETFGPLLTLMGKNNGSNVMSADNSLSLQTYLTRITRVRLRLQQVASASDPQEMMQSLAQTVFQGKSVDLTDTQQYGSLIAASLGEEWSGFGSTMFVQPLTQAWETVLQPSAASLNDKWSRSVVANWHTAFDGRFPFAVSKSDSSLPMLAEFVRKDSGRIERFLTTELGGVLHKEGSQWVPDKVNSQGLNFNPAFLRAINQLSQLSDILFTDGSQGISFELQARPVPQVVETQLTIDGQKLHYFNQMADWQSFRWPGDTYKPGTMLTWTTVNAGARLFGDYSGTWGFIRWLDESKREQLDRSQWMMSFTAPDGRTLQWVLRSQLGSGPLALLALRGFTLPDQIFSVDSAAMAQALMTNTENSDMDGVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9978 - -


  Protein sequence: 1148 a.a.    

>T6CP207861 NZ_CP056118:c4301760-4298317 [Enterobacter sp. DSM 30060] [TssM]
MTQKKELQSARYGFWGYFILIIGLAGITAFLLFINQDALLKYGLAYRQIMSVWGGVFCFLFLGTVCSPFYWRRKQRKKQR
NYLPPDSSGAETKTNPDVMTTITDYTDLKQHLNLRYRVFWRRKVRLLLITGDEAAIEQLVPGLQQQQWLEGNRTVLIYGG
SLASEPDREKYTALRKLRRGRPLDGIIRVLPESPKLTPHISDSDLRGLEKISELLRYSAPVWLWQLCSSHWSQGTRPEQA
VGASFPPRAKEDDVIRQLELMLPALRAQGMSQVAENSSHDFLLRLSQHLNDGAIARWAQQLQPWFFVSQQRVPLRGLMFS
LSEKKPAGMSAGTADAENYGSQRHALTLPATWQGIVDDCTRVRGRRVGMPWERALAWSLMAIISVWGGGMLLSFAVNRSQ
IVSVAQQAHALVEHPSVSDYQLTALHALRNDAGRLLHHIQDGAPWYQRFGLNHDQQLLDALLPWYGVANNRLIRDPANEA
LKQKLIALVNSAPNSDQRTQMAKPGYDQLKAWLMMSRPDKADGAFYAQTMKTVQPTRLGISTGLWQSLSPDLWAFYITEL
PKQPLWKTTPDAQLVSQSRQVLLQQIGRRNAESTLYENMLKSVRRNFADVSLEDMTGGTDARRLFTTDEVVPGMFTRQAW
EGGIQQAIEKAANSRRDEIDWVLSDSRKTVSSDLSPEALKARLTERYFTDFAGSWLSFLNSLQLNPANNIADVTDQLTLM
SDVRQSPLIALMNTLAWQGQAGQKSEGLSDSIIKSAKDLVGGKDKPVIDQSASGPQGPLDETFGPLLTLMGKNNGSNVMS
ADNSLSLQTYLTRITRVRLRLQQVASASDPQEMMQSLAQTVFQGKSVDLTDTQQYGSLIAASLGEEWSGFGSTMFVQPLT
QAWETVLQPSAASLNDKWSRSVVANWHTAFDGRFPFAVSKSDSSLPMLAEFVRKDSGRIERFLTTELGGVLHKEGSQWVP
DKVNSQGLNFNPAFLRAINQLSQLSDILFTDGSQGISFELQARPVPQVVETQLTIDGQKLHYFNQMADWQSFRWPGDTYK
PGTMLTWTTVNAGARLFGDYSGTWGFIRWLDESKREQLDRSQWMMSFTAPDGRTLQWVLRSQLGSGPLALLALRGFTLPD
QIFSVDSAAMAQALMTNTENSDMDGVE*

  Nucleotide sequence: 3444 bp    

>T6CP207861 NZ_CP056118:c4301760-4298317 [Enterobacter sp. DSM 30060] [TssM]
ATGACCCAGAAAAAGGAATTGCAGTCGGCACGTTATGGATTTTGGGGGTATTTTATTTTGATTATTGGCCTTGCTGGTAT
AACTGCGTTTTTGCTGTTTATTAATCAGGATGCCTTGCTTAAGTATGGTCTGGCATATCGCCAAATTATGTCTGTATGGG
GTGGTGTGTTTTGTTTTTTATTTTTAGGCACTGTTTGCTCTCCTTTTTATTGGCGGAGGAAGCAAAGAAAAAAACAACGC
AATTATTTACCACCGGATTCCTCGGGGGCTGAAACTAAAACAAATCCTGATGTGATGACAACAATCACAGATTATACAGA
TTTAAAACAGCACCTTAATCTTCGTTATAGAGTCTTTTGGCGTCGCAAAGTCCGGTTATTATTAATCACCGGCGATGAAG
CCGCGATTGAACAACTGGTACCCGGCCTGCAACAGCAGCAGTGGCTTGAAGGCAACCGCACCGTGCTGATTTACGGCGGC
AGCCTGGCATCGGAGCCTGACCGCGAAAAATACACCGCGCTGCGTAAACTACGCCGCGGGCGCCCGCTGGACGGGATTAT
CCGTGTACTGCCTGAGTCGCCTAAGTTGACCCCACATATCAGCGACAGCGATTTACGCGGCCTGGAAAAAATCAGCGAAC
TGCTGCGTTATTCCGCTCCGGTCTGGCTGTGGCAACTGTGCAGCAGTCACTGGTCGCAGGGTACGCGTCCTGAGCAGGCG
GTAGGCGCAAGCTTTCCACCACGCGCAAAAGAAGATGATGTAATCCGCCAGCTGGAACTGATGCTGCCGGCCCTGCGGGC
GCAGGGGATGAGTCAGGTCGCGGAAAACAGCAGCCACGACTTCCTGCTGCGCCTGAGCCAGCACCTGAACGACGGTGCTA
TTGCCCGCTGGGCTCAGCAGTTGCAGCCATGGTTCTTTGTTTCTCAGCAGCGCGTCCCGCTGCGTGGTCTGATGTTCAGC
CTGTCGGAGAAGAAACCTGCCGGAATGTCAGCGGGAACAGCCGACGCTGAGAATTATGGATCACAGCGTCATGCCTTGAC
TCTGCCAGCAACCTGGCAGGGTATTGTTGACGACTGCACCCGCGTACGTGGCCGTCGTGTCGGTATGCCGTGGGAACGAG
CGCTGGCCTGGTCACTGATGGCCATCATCAGTGTCTGGGGGGGAGGGATGCTGCTGTCGTTTGCGGTCAACCGGTCACAA
ATAGTTTCTGTTGCACAGCAGGCTCATGCTCTGGTGGAGCACCCTTCTGTATCGGATTACCAGCTGACGGCCCTGCATGC
TTTGCGTAATGATGCCGGTCGCCTGCTGCACCATATTCAGGACGGCGCGCCATGGTATCAGCGCTTTGGTCTTAACCATG
ATCAGCAGTTGCTTGACGCATTGCTGCCCTGGTACGGGGTGGCGAACAACCGTCTGATACGTGATCCGGCAAATGAAGCG
CTTAAGCAGAAGCTCATTGCGCTGGTCAATTCGGCACCCAACAGCGACCAGCGGACACAGATGGCGAAACCAGGTTATGA
CCAGCTGAAAGCCTGGCTGATGATGTCCCGTCCGGATAAAGCTGATGGTGCATTCTACGCGCAAACCATGAAAACCGTGC
AGCCGACGCGTTTAGGTATCTCAACTGGCCTGTGGCAAAGCCTGTCACCGGATTTGTGGGCCTTCTACATCACCGAACTG
CCTAAGCAGCCACTGTGGAAAACCACACCGGATGCGCAACTGGTCAGCCAGAGCCGCCAGGTGTTGTTGCAGCAGATAGG
ACGGCGCAACGCGGAAAGTACGCTGTACGAGAACATGCTCAAATCCGTACGTCGTAACTTTGCCGATGTGTCTCTGGAGG
ACATGACTGGCGGTACCGATGCCCGTCGCCTGTTTACCACCGATGAGGTGGTGCCGGGCATGTTCACCCGTCAGGCCTGG
GAGGGAGGGATTCAGCAGGCCATTGAGAAAGCGGCAAACTCCCGCCGCGATGAAATCGACTGGGTACTGAGCGACAGCCG
GAAAACCGTTTCCTCAGACCTGTCGCCGGAAGCACTGAAAGCACGTCTGACGGAACGCTACTTCACCGACTTTGCCGGTA
GCTGGCTGAGCTTCCTCAACAGCCTGCAACTTAATCCGGCAAACAATATTGCAGACGTCACTGACCAGCTGACGCTGATG
AGTGATGTTCGCCAGTCACCGCTGATTGCCCTGATGAACACCCTCGCCTGGCAGGGGCAGGCCGGCCAGAAGAGTGAAGG
CCTATCGGACTCCATCATCAAATCGGCTAAAGACCTGGTAGGCGGGAAGGACAAACCGGTAATTGACCAGTCAGCCTCAG
GCCCGCAGGGCCCACTGGATGAAACCTTTGGACCGTTGCTAACACTTATGGGTAAAAACAACGGCAGCAACGTTATGTCG
GCTGACAATTCACTGAGCCTGCAAACGTATCTTACCCGTATCACCCGTGTGCGTCTGCGTCTGCAACAGGTCGCCAGCGC
CTCTGACCCTCAGGAAATGATGCAGAGCCTGGCGCAGACCGTATTCCAGGGCAAAAGCGTGGACCTGACCGACACCCAGC
AGTACGGCAGCCTGATTGCTGCAAGCCTGGGCGAAGAGTGGAGTGGTTTTGGCAGCACCATGTTTGTGCAGCCGCTGACC
CAGGCCTGGGAAACTGTGCTTCAGCCATCGGCAGCGAGCCTGAATGACAAATGGAGTCGTTCCGTGGTGGCGAACTGGCA
TACGGCATTTGACGGACGTTTCCCATTTGCTGTCAGCAAGAGTGATTCCTCTCTGCCAATGCTGGCTGAGTTTGTGCGTA
AGGACAGCGGACGCATTGAGCGCTTCCTGACCACGGAACTCGGCGGTGTGCTGCATAAGGAGGGCAGCCAGTGGGTACCG
GATAAGGTCAACAGCCAGGGACTGAACTTTAACCCAGCCTTCCTGCGGGCGATTAATCAGCTCAGCCAGCTATCGGATAT
CTTGTTTACCGACGGCAGTCAGGGCATCAGCTTTGAACTACAGGCGCGTCCGGTACCGCAGGTGGTAGAAACTCAACTAA
CTATTGATGGACAAAAGCTACACTACTTCAACCAGATGGCAGACTGGCAGAGCTTCCGCTGGCCTGGTGACACCTACAAG
CCCGGAACCATGCTGACATGGACCACCGTCAATGCGGGTGCACGTCTGTTTGGTGATTACAGCGGAACCTGGGGCTTTAT
TCGCTGGCTGGATGAGAGTAAACGAGAGCAGCTTGACCGCAGTCAGTGGATGATGAGTTTTACCGCGCCGGATGGTCGTA
CCCTACAGTGGGTACTGCGTTCACAACTGGGCAGTGGGCCGCTGGCGTTACTGGCACTGCGGGGCTTCACGCTGCCAGAT
CAAATATTTAGCGTAGATAGCGCGGCTATGGCGCAGGCGCTGATGACCAATACAGAAAACAGTGACATGGACGGAGTCGA
ATAA