Detailed information of component protein


Summary

Component ID T6CP207862
Component protein type PAAR
T6SS ID (Type) T6SS13922 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (87 a.a.); Nucleotide sequence (261 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS20565
Coordinate (Strand) 4302882..4303142 (-)
NCBI ID WP_072049838.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 6.5e-21 8..77
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-86 MSGIVCLGDDTTHGGKVIAASSTMFINGIQVALVGDLVSCPIHGVNQIKEGDSRASENGLNVVVNNCACACGCKVISSHIENTIES


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9296 - -


  Protein sequence: 87 a.a.    

>T6CP207862 NZ_CP056118:c4303142-4302882 [Enterobacter sp. DSM 30060] [PAAR]
MSGIVCLGDDTTHGGKVIAASSTMFINGIQVALVGDLVSCPIHGVNQIKEGDSRASENGLNVVVNNCACACGCKVISSHI
ENTIES*

  Nucleotide sequence: 261 bp    

>T6CP207862 NZ_CP056118:c4303142-4302882 [Enterobacter sp. DSM 30060] [PAAR]
ATGTCTGGAATTGTTTGCCTGGGTGATGATACCACTCATGGTGGAAAGGTTATTGCCGCGTCGTCGACAATGTTTATCAA
TGGTATTCAGGTTGCCCTCGTCGGTGATTTAGTTTCTTGCCCAATACACGGAGTCAATCAGATAAAAGAAGGAGATTCAA
GAGCATCAGAAAATGGGTTAAATGTTGTTGTTAATAACTGTGCTTGTGCCTGTGGATGCAAAGTCATTAGTTCTCACATC
GAAAATACTATTGAGTCTTAA