Detailed information of component protein


Summary

Component ID T6CP207864
Component protein type TssH
T6SS ID (Type) T6SS13922 insolico (Type i2)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (882 a.a.); Nucleotide sequence (2646 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS20595
Coordinate (Strand) 4310832..4313477 (-)
NCBI ID WP_063149693.1
RefSeq NZ_CP056118
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.2e-38 607..772
AAA_lid_9 PF17871.3 2.2e-31 375..465
ClpB_D2-small PF10431.11 2.7e-12 778..851
AAA PF00004.31 5.3e-09 235..347
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-881 MENPAILLRRLNPYCARAMEGAASLCQTRAHAEILPEHWLLKLLEQGEGDLTVLARRYEWDMDTIWQDMLGFLDSLPRSVRSRPQLSDNVRALMQDAWLRASLSGEEHIRSIHLLMALVDKPKLVRCDGLWPLLTLAQSQLEHLRGLLDVQSDERPEVQQEAELRQGDEVEFVGRPVNADIKGELNPALQNALDRFTLDVTARAREGRIDPVYGRDNEIRQMVDILSRRRKNNPILVGEPGVGKTALVEGLALRIAEGNVPDALKPVSVRTLDLGLLQAGAGVKGEFEQRLKNIIDAVQQSPLPVLLFIDEAHTIIGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLMLRGLKSRYAQHHGVHITDEAVKAAVTLSRRYLTGRQLPDKAVDLLDTASARVRMSLDTVPEPLTRMKAQLTALAMEKQALLEDIAVGNTAHGERLAAIGEEEVGIILQLDERETRYGQELKLTEELLACRTDISRQGEIADLQMQLTAVQQNTPLLGLDVDARTVATVIADWTGVPLSSLMKDEQTELLSLEHSLAKRVVGQDSALNAIAQRLRASKTGLAPENGPQGVFLLVGPSGTGKTETALALADELFGGEKSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGILTEAVRKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDGEGREIDFRNTVILMTSNLGSDLIMQMLDENPVATEGELHELLRPVLRDHFQPALLARFQTVIYRQLAQAAMRTIVGMKLGQVSQRLARHYGMKTAIADSLSDALTDACLLPDTGARNIDSLLNQQILPVLSQQLLSQMAAGRKPHTLTLGWDEEEGIVLEFDRTEGEHA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9032 - -


  Protein sequence: 882 a.a.    

>T6CP207864 NZ_CP056118:c4313477-4310832 [Enterobacter sp. DSM 30060] [TssH]
MENPAILLRRLNPYCARAMEGAASLCQTRAHAEILPEHWLLKLLEQGEGDLTVLARRYEWDMDTIWQDMLGFLDSLPRSV
RSRPQLSDNVRALMQDAWLRASLSGEEHIRSIHLLMALVDKPKLVRCDGLWPLLTLAQSQLEHLRGLLDVQSDERPEVQQ
EAELRQGDEVEFVGRPVNADIKGELNPALQNALDRFTLDVTARAREGRIDPVYGRDNEIRQMVDILSRRRKNNPILVGEP
GVGKTALVEGLALRIAEGNVPDALKPVSVRTLDLGLLQAGAGVKGEFEQRLKNIIDAVQQSPLPVLLFIDEAHTIIGAGN
QAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLMLRGLKSRYAQHHGVHITDE
AVKAAVTLSRRYLTGRQLPDKAVDLLDTASARVRMSLDTVPEPLTRMKAQLTALAMEKQALLEDIAVGNTAHGERLAAIG
EEEVGIILQLDERETRYGQELKLTEELLACRTDISRQGEIADLQMQLTAVQQNTPLLGLDVDARTVATVIADWTGVPLSS
LMKDEQTELLSLEHSLAKRVVGQDSALNAIAQRLRASKTGLAPENGPQGVFLLVGPSGTGKTETALALADELFGGEKSLI
TINLSEYQEPHTVSQLKGSPPGYVGYGQGGILTEAVRKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDGEGREIDFR
NTVILMTSNLGSDLIMQMLDENPVATEGELHELLRPVLRDHFQPALLARFQTVIYRQLAQAAMRTIVGMKLGQVSQRLAR
HYGMKTAIADSLSDALTDACLLPDTGARNIDSLLNQQILPVLSQQLLSQMAAGRKPHTLTLGWDEEEGIVLEFDRTEGEH
A*

  Nucleotide sequence: 2646 bp    

>T6CP207864 NZ_CP056118:c4313477-4310832 [Enterobacter sp. DSM 30060] [TssH]
ATGGAAAATCCAGCCATCCTGTTACGCCGTCTTAACCCTTACTGTGCCCGCGCGATGGAAGGGGCCGCTTCCCTGTGCCA
GACCCGCGCCCATGCCGAAATCCTGCCCGAGCACTGGCTGCTGAAGCTGCTGGAGCAGGGTGAGGGCGACCTGACGGTGC
TGGCGCGGCGCTACGAATGGGATATGGATACGATATGGCAGGATATGCTGGGTTTTCTGGACAGCCTGCCACGTTCGGTG
CGCAGCCGTCCGCAGCTGTCGGACAATGTCCGGGCACTGATGCAGGACGCCTGGCTGCGAGCCTCGCTGTCGGGGGAAGA
GCACATCCGCAGCATTCACCTCCTGATGGCCCTGGTGGACAAACCGAAACTGGTGCGCTGCGACGGCCTGTGGCCGCTGC
TGACGCTGGCGCAGAGCCAGCTTGAGCACCTGCGGGGGCTTCTGGATGTGCAGTCGGACGAACGCCCGGAGGTGCAGCAG
GAAGCGGAGCTTAGGCAGGGCGATGAGGTGGAGTTTGTCGGCCGTCCGGTGAATGCGGATATAAAAGGAGAGCTGAACCC
GGCGTTGCAGAATGCGCTGGACAGGTTCACCCTCGACGTCACCGCCCGCGCCCGTGAGGGCAGAATCGACCCGGTCTATG
GCCGCGACAATGAAATCCGCCAGATGGTGGACATTCTTTCCCGGCGCCGCAAGAACAACCCGATTCTGGTGGGCGAACCG
GGAGTCGGCAAGACCGCGCTCGTGGAAGGACTGGCGCTGCGCATCGCCGAAGGCAATGTGCCGGACGCGCTGAAGCCGGT
CTCGGTACGCACCCTTGACCTCGGCCTGTTACAGGCGGGTGCAGGCGTGAAGGGTGAGTTTGAACAGCGCCTGAAAAACA
TCATCGACGCGGTGCAGCAGTCACCCCTGCCGGTTCTGCTCTTCATTGACGAGGCGCACACCATTATCGGTGCGGGCAAC
CAGGCGGGGGGCGCCGATGCGGCCAACCTGCTGAAACCGGCACTGGCCCGCGGTGAGCTCAGAACCATCGCCGCCACCAC
CTGGAGCGAATACAAGCAGTACTTTGAGCGCGACGCCGCGCTGGAGCGTCGTTTCCAGATGGTGAAAGTTGACGAACCGG
ACGACGACACCGCCTGCCTGATGCTGCGGGGACTCAAGTCACGCTACGCGCAGCATCACGGTGTGCATATTACGGATGAG
GCGGTTAAAGCCGCCGTCACGCTCTCCAGACGCTATCTGACCGGACGCCAGCTGCCGGACAAGGCGGTTGACCTGCTGGA
CACCGCTTCGGCCCGTGTCCGCATGAGCCTGGATACGGTGCCGGAGCCGCTGACCAGGATGAAGGCGCAGCTCACGGCAC
TGGCCATGGAGAAACAGGCGCTGCTGGAGGATATCGCGGTGGGCAATACCGCCCACGGCGAACGTCTGGCCGCCATCGGA
GAGGAAGAAGTCGGCATCATTTTGCAGCTCGATGAACGGGAAACCCGGTACGGCCAGGAACTGAAACTCACGGAAGAACT
GCTTGCCTGCCGCACGGATATCTCCCGTCAGGGGGAAATTGCGGACCTTCAGATGCAGCTTACTGCCGTGCAGCAGAATA
CCCCGCTGCTGGGGCTGGATGTGGACGCGCGTACCGTCGCCACCGTTATCGCCGACTGGACCGGCGTACCGCTCTCTTCC
CTGATGAAGGACGAGCAGACGGAACTGCTGAGTCTTGAGCACAGTCTGGCGAAACGCGTTGTCGGTCAGGACAGTGCGCT
GAATGCCATTGCGCAGCGCCTGCGCGCCAGCAAAACCGGTCTGGCACCGGAGAACGGCCCGCAGGGCGTGTTCCTGCTTG
TGGGCCCGAGCGGCACCGGCAAGACCGAAACCGCCCTGGCGCTGGCCGATGAACTGTTCGGCGGCGAGAAGTCCCTTATT
ACTATCAACCTCTCGGAATACCAGGAGCCACACACCGTCTCGCAGCTCAAGGGCTCACCGCCGGGCTACGTGGGTTACGG
TCAGGGCGGCATTCTGACCGAAGCCGTCCGTAAGCGCCCGTACAGCGTGGTGTTGCTGGATGAAGTGGAAAAGGCACACC
GGGACGTGATGAACCTGTTCTACCAGGTGTTTGACCGGGGCTTCATGCGCGACGGCGAGGGGCGGGAAATTGACTTCCGC
AACACGGTGATACTGATGACCTCGAACCTTGGCAGCGACCTTATCATGCAGATGCTGGATGAAAATCCGGTCGCCACCGA
AGGCGAACTGCATGAACTGCTGCGTCCTGTCCTGCGGGACCACTTCCAGCCCGCGCTGCTGGCGCGCTTCCAGACGGTGA
TTTACCGTCAGCTGGCACAGGCAGCGATGCGTACGATTGTCGGCATGAAGCTCGGCCAGGTGAGTCAGCGCCTGGCCCGG
CATTACGGCATGAAAACCGCTATAGCAGACAGCCTGTCTGATGCGCTGACCGATGCCTGCCTGCTGCCGGACACCGGGGC
GCGCAATATCGACAGCCTGCTGAACCAGCAGATTCTGCCGGTCCTGAGCCAGCAGCTGCTGAGCCAGATGGCGGCGGGAA
GGAAGCCGCATACCCTGACGCTTGGCTGGGATGAGGAAGAGGGCATAGTGCTCGAGTTTGACCGGACAGAAGGTGAGCAT
GCATGA