Detailed information of component protein
Summary
| Component ID | T6CP207870 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS13922  (Type i2) |
| Strain | Enterobacter sp. DSM 30060 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | HWQ15_RS20625 |
| Coordinate (Strand) | 4319468..4319959 (-) |
| NCBI ID | WP_023300236.1 |
| RefSeq | NZ_CP056118 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 4.2e-52 | 7..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MADSFQNEVPKARINLKLALHTGGAQKKVELPLKLLTVGDFSNGKENRPLSERKKINVNKNNFNSVLSEFNPEVNLTVPNTMAVDGSEESIKLNFSDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEKILKDPALSQELRDEMSALAPK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9925 | - | - |
Protein sequence: 164 a.a.
>T6CP207870 NZ_CP056118:c4319959-4319468 [Enterobacter sp. DSM 30060] [TssB]
MADSFQNEVPKARINLKLALHTGGAQKKVELPLKLLTVGDFSNGKENRPLSERKKINVNKNNFNSVLSEFNPEVNLTVPN
TMAVDGSEESIKLNFSDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEKILKDPALSQELRDEMSAL
APK*
MADSFQNEVPKARINLKLALHTGGAQKKVELPLKLLTVGDFSNGKENRPLSERKKINVNKNNFNSVLSEFNPEVNLTVPN
TMAVDGSEESIKLNFSDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEKILKDPALSQELRDEMSAL
APK*
Nucleotide sequence: 492 bp
>T6CP207870 NZ_CP056118:c4319959-4319468 [Enterobacter sp. DSM 30060] [TssB]
ATGGCCGATTCATTTCAGAATGAGGTGCCCAAGGCACGCATAAATTTAAAACTGGCGCTGCATACAGGCGGCGCGCAGAA
GAAAGTCGAACTGCCGCTTAAACTTCTCACTGTCGGTGATTTCAGTAATGGAAAAGAGAATCGTCCATTGTCCGAAAGGA
AGAAAATCAACGTCAACAAAAATAACTTTAATAGCGTACTTTCGGAATTTAACCCGGAGGTTAATCTGACGGTGCCTAAC
ACCATGGCTGTCGATGGTTCGGAGGAAAGTATAAAACTGAATTTCTCCGATATTAAGGATTTCGAACCTGAACAGGTTGC
CCGCCAGATCCCCCAGCTCCGCGCCATGCTGGCCATGCGTAATTTATTACGCGACCTCAAATCCAATCTTCTTGATAACG
CCACTTTCAGAAAAGAACTCGAGAAAATTCTTAAAGACCCGGCGCTGTCTCAGGAATTACGTGACGAAATGAGTGCACTG
GCCCCGAAATAA
ATGGCCGATTCATTTCAGAATGAGGTGCCCAAGGCACGCATAAATTTAAAACTGGCGCTGCATACAGGCGGCGCGCAGAA
GAAAGTCGAACTGCCGCTTAAACTTCTCACTGTCGGTGATTTCAGTAATGGAAAAGAGAATCGTCCATTGTCCGAAAGGA
AGAAAATCAACGTCAACAAAAATAACTTTAATAGCGTACTTTCGGAATTTAACCCGGAGGTTAATCTGACGGTGCCTAAC
ACCATGGCTGTCGATGGTTCGGAGGAAAGTATAAAACTGAATTTCTCCGATATTAAGGATTTCGAACCTGAACAGGTTGC
CCGCCAGATCCCCCAGCTCCGCGCCATGCTGGCCATGCGTAATTTATTACGCGACCTCAAATCCAATCTTCTTGATAACG
CCACTTTCAGAAAAGAACTCGAGAAAATTCTTAAAGACCCGGCGCTGTCTCAGGAATTACGTGACGAAATGAGTGCACTG
GCCCCGAAATAA