Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01217  |
| T6SS type | Type i3 |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon (RefSeq) | chromosome (NZ_CP043403) |
| Location | 2270145..2301263 |
| Function | - |
| Comment | - |
| References | [1] Zhu PC, Li YM, Yang X, Zou HF, Zhu XL, Niu XN, Xu LH, Jiang W, Huang S, Tang JL, He YQ. et al (2020) Type VI secretion system is not required for virulence on rice but for inter-bacterial competition in Xanthomonas oryzae pv. oryzicola.. Res Microbiol. 171(2):64-73. [PudMed:31676435] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| XOCgx_RS10775 | 2265386..2266411 | - | 1026 | WP_149621572.1 | hypothetical protein | ||
| XOCgx_RS10780 | 2266415..2269279 | - | 2865 | WP_149621573.1 | hypothetical protein | ||
| XOCgx_RS10785 | 2269298..2270203 | - | 906 | WP_080496134.1 | DUF4123 domain-containing protein | ||
| T6CP015386 | TssI | XOCgx_RS10790 | 2270145..2272907 | - | 2763 | WP_149621574.1 | type VI secretion system tip protein VgrG |
| T6CP015387 | TssB | XOCgx_RS10795 (tssB) | 2273508..2274014 | + | 507 | WP_024711387.1 | type VI secretion system contractile sheath small subunit |
| T6CP015388 | TssC | XOCgx_RS10800 (tssC) | 2274007..2275521 | + | 1515 | WP_149621575.1 | type VI secretion system contractile sheath large subunit |
| T6CP015389 | TssD | XOCgx_RS10805 | 2275621..2276124 | + | 504 | WP_024711385.1 | type VI secretion system tube protein Hcp |
| XOCgx_RS10810 | 2276160..2276993 | + | 834 | WP_011259604.1 | hypothetical protein | ||
| T6CP015390 | TssE | XOCgx_RS10815 (tssE) | 2276981..2277484 | + | 504 | WP_149621576.1 | type VI secretion system baseplate subunit TssE |
| T6CP015391 | TssF | XOCgx_RS10820 (tssF) | 2277488..2279365 | + | 1878 | WP_047339877.1 | type VI secretion system baseplate subunit TssF |
| T6CP015392 | TssG | XOCgx_RS10825 (tssG) | 2279329..2280339 | + | 1011 | WP_027703474.1 | type VI secretion system baseplate subunit TssG |
| XOCgx_RS10830 (tssH) | 2280372..2283077 | + | 2706 | WP_149621577.1 | type VI secretion system ATPase TssH | ||
| T6CP015393 | TssH | XOCgx_RS10835 | 2283266..2283763 | + | 498 | WP_027703476.1 | hypothetical protein |
| XOCgx_RS10840 | 2283829..2284323 | + | 495 | WP_149621578.1 | hypothetical protein | ||
| XOCgx_RS10845 | 2284384..2284593 | + | 210 | pseudogene | IS5/IS1182 family transposase | ||
| XOCgx_RS10850 | 2284734..2285192 | + | 459 | WP_149621579.1 | hypothetical protein | ||
| T6CP015394 | TssI | XOCgx_RS10855 (tssI) | 2285456..2287393 | + | 1938 | WP_041183296.1 | type VI secretion system tip protein VgrG |
| XOCgx_RS10860 | 2287402..2287941 | + | 540 | WP_014503444.1 | hypothetical protein | ||
| XOCgx_RS10865 (tagH) | 2287938..2289362 | + | 1425 | WP_149621580.1 | type VI secretion system-associated FHA domain protein TagH | ||
| T6CP015395 | TssK | XOCgx_RS10870 (tssK) | 2289359..2290696 | + | 1338 | WP_149621581.1 | type VI secretion system baseplate subunit TssK |
| T6CP015396 | TssL | XOCgx_RS10875 (tssL) | 2290698..2292014 | + | 1317 | WP_149621582.1 | type IVB secretion system protein IcmH/DotU |
| T6CP015397 | TssM | XOCgx_RS10880 (tssM) | 2292018..2295476 | + | 3459 | WP_149621583.1 | type VI secretion system membrane subunit TssM |
| XOCgx_RS10885 (tagF) | 2295473..2296120 | + | 648 | WP_048483311.1 | type VI secretion system-associated protein TagF | ||
| XOCgx_RS10890 | 2296117..2296839 | + | 723 | WP_044750449.1 | serine/threonine-protein phosphatase | ||
| XOCgx_RS10895 | 2296836..2299739 | + | 2904 | WP_149621584.1 | protein kinase | ||
| XOCgx_RS10900 | 2299736..2300062 | + | 327 | WP_044750447.1 | hypothetical protein | ||
| T6CP015398 | TssA | XOCgx_RS10910 (tssA) | 2300235..2301263 | - | 1029 | WP_047339870.1 | type VI secretion system protein TssA |
| XOCgx_RS10915 | 2301272..2302252 | - | 981 | WP_047339869.1 | LysR family transcriptional regulator | ||
| XOCgx_RS10920 | 2302366..2304825 | - | 2460 | WP_149621585.1 | two-component system VirA-like sensor kinase | ||
| XOCgx_RS10925 | 2304822..2305814 | - | 993 | WP_014503433.1 | c-type cytochrome |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|