Detailed information of component protein
Summary
| Component ID | T6CP015393 |
| Component protein type | TssH |
| T6SS ID (Type) | T6SS01217  (Type i3) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (166 a.a.); Nucleotide sequence (498 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XOCgx_RS10835 |
| Coordinate (Strand) | 2283266..2283763 (+) |
| NCBI ID | WP_027703476.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| OTT_1508_deam | PF14441.8 | 8.7e-11 | 105..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-165 | MMPKALRKRVNRKDKGYHALRRSEINDLDKAASFLLAISYSGRTSQTKASQGLIQMDCVALAVINNEWLVAANSRRLDDWHMEALAQELGFDFTYAIVERGQGGMHAEMQVLEEIKASSYSSKGVHMGVSKPCCFDCKSTLDTVQALYSQYHTDTVVNWEAPDLR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9364 | - | - |
Protein sequence: 166 a.a.
>T6CP015393 NZ_CP043403:2283266-2283763 [Xanthomonas oryzae pv. oryzicola] [TssH]
MMPKALRKRVNRKDKGYHALRRSEINDLDKAASFLLAISYSGRTSQTKASQGLIQMDCVALAVINNEWLVAANSRRLDDW
HMEALAQELGFDFTYAIVERGQGGMHAEMQVLEEIKASSYSSKGVHMGVSKPCCFDCKSTLDTVQALYSQYHTDTVVNWE
APDLR*
MMPKALRKRVNRKDKGYHALRRSEINDLDKAASFLLAISYSGRTSQTKASQGLIQMDCVALAVINNEWLVAANSRRLDDW
HMEALAQELGFDFTYAIVERGQGGMHAEMQVLEEIKASSYSSKGVHMGVSKPCCFDCKSTLDTVQALYSQYHTDTVVNWE
APDLR*
Nucleotide sequence: 498 bp
>T6CP015393 NZ_CP043403:2283266-2283763 [Xanthomonas oryzae pv. oryzicola] [TssH]
ATGATGCCAAAGGCATTGCGTAAGCGAGTTAACCGCAAGGATAAGGGCTACCATGCGCTCCGGCGTTCGGAGATAAACGA
CCTGGACAAGGCTGCAAGTTTTTTACTAGCAATTAGTTACTCTGGCCGAACTTCGCAGACAAAAGCTTCCCAAGGACTGA
TTCAAATGGATTGTGTTGCACTGGCGGTCATTAACAACGAATGGCTAGTGGCGGCAAATAGCCGTCGACTCGACGACTGG
CATATGGAGGCGCTGGCCCAGGAGCTGGGTTTTGATTTTACATACGCCATCGTCGAGCGTGGACAGGGTGGCATGCATGC
CGAGATGCAGGTTTTGGAAGAGATTAAAGCCAGTAGCTACTCGTCAAAGGGCGTACATATGGGAGTCTCGAAGCCGTGCT
GTTTCGATTGCAAGTCGACGCTTGATACCGTGCAAGCTCTGTACTCCCAATACCACACAGATACAGTGGTTAACTGGGAG
GCTCCGGATTTAAGATAG
ATGATGCCAAAGGCATTGCGTAAGCGAGTTAACCGCAAGGATAAGGGCTACCATGCGCTCCGGCGTTCGGAGATAAACGA
CCTGGACAAGGCTGCAAGTTTTTTACTAGCAATTAGTTACTCTGGCCGAACTTCGCAGACAAAAGCTTCCCAAGGACTGA
TTCAAATGGATTGTGTTGCACTGGCGGTCATTAACAACGAATGGCTAGTGGCGGCAAATAGCCGTCGACTCGACGACTGG
CATATGGAGGCGCTGGCCCAGGAGCTGGGTTTTGATTTTACATACGCCATCGTCGAGCGTGGACAGGGTGGCATGCATGC
CGAGATGCAGGTTTTGGAAGAGATTAAAGCCAGTAGCTACTCGTCAAAGGGCGTACATATGGGAGTCTCGAAGCCGTGCT
GTTTCGATTGCAAGTCGACGCTTGATACCGTGCAAGCTCTGTACTCCCAATACCACACAGATACAGTGGTTAACTGGGAG
GCTCCGGATTTAAGATAG