Detailed information of component protein


Summary

Component ID T6CP015395
Component protein type TssK
T6SS ID (Type) T6SS01217 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (446 a.a.); Nucleotide sequence (1338 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS10870
Coordinate (Strand) 2289359..2290696 (+)
NCBI ID WP_149621581.1
RefSeq NZ_CP043403
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 4.5e-146 19..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-445 MSPYNKVIWSEGLFLRPQHLQQQERYLERYMELHAGALRPHAWGFSVLELEPELLSIGKLGIRRARGCFPDGTPFSIPDRDPAPPPLDVPANCRDQVVSLALPLRATTQPDSTWPDGDGSRLARYRVGEAEVGDSSGSIAGTVLLEVGVLASRLRLQSEPGEGLVEVPMARIVECRADRRVILDDAFIPTAIRIEGAARLSMLLAELLGLLHQRGQALADRVAGSDRSGVAEIADVLMLQVINRYQPLVAHWASAPLEHPEALYCVLLGMAGELATFTRASKRSGPFPPYAHDALQASFEPVVVSLRESLSAVLEQSAIAVPLQQRKYGVWVGMVPDPALLDAAAFVLAVKADLRAEDLRKRLPAESKIGPVERIRDLVNLQLPGVAVSALAMAPRQVPYHAGCAYFELDRQSSLWKTLRTSGGVALHFGSGFPGLELELWAVRN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9963 - -


  Protein sequence: 446 a.a.    

>T6CP015395 NZ_CP043403:2289359-2290696 [Xanthomonas oryzae pv. oryzicola] [TssK]
MSPYNKVIWSEGLFLRPQHLQQQERYLERYMELHAGALRPHAWGFSVLELEPELLSIGKLGIRRARGCFPDGTPFSIPDR
DPAPPPLDVPANCRDQVVSLALPLRATTQPDSTWPDGDGSRLARYRVGEAEVGDSSGSIAGTVLLEVGVLASRLRLQSEP
GEGLVEVPMARIVECRADRRVILDDAFIPTAIRIEGAARLSMLLAELLGLLHQRGQALADRVAGSDRSGVAEIADVLMLQ
VINRYQPLVAHWASAPLEHPEALYCVLLGMAGELATFTRASKRSGPFPPYAHDALQASFEPVVVSLRESLSAVLEQSAIA
VPLQQRKYGVWVGMVPDPALLDAAAFVLAVKADLRAEDLRKRLPAESKIGPVERIRDLVNLQLPGVAVSALAMAPRQVPY
HAGCAYFELDRQSSLWKTLRTSGGVALHFGSGFPGLELELWAVRN*

  Nucleotide sequence: 1338 bp    

>T6CP015395 NZ_CP043403:2289359-2290696 [Xanthomonas oryzae pv. oryzicola] [TssK]
ATGAGCCCTTACAACAAGGTGATCTGGAGCGAGGGCCTGTTCCTGCGCCCGCAGCACCTGCAACAACAGGAGCGCTATCT
GGAGCGCTACATGGAACTGCATGCCGGTGCGCTCCGGCCGCATGCGTGGGGTTTCAGCGTACTGGAGCTGGAGCCGGAAT
TGCTGTCCATCGGCAAGCTCGGCATCCGGCGCGCCCGCGGCTGCTTTCCCGATGGCACGCCGTTTTCCATTCCCGATCGC
GATCCGGCACCGCCGCCGTTGGACGTGCCGGCCAACTGCCGCGACCAGGTGGTGAGTCTGGCGCTGCCGCTGCGCGCGAC
CACGCAGCCGGATAGCACCTGGCCGGATGGCGACGGCAGCCGGCTGGCCCGTTATCGCGTGGGCGAAGCGGAGGTCGGCG
ATTCGTCCGGCAGCATCGCCGGCACGGTCCTGCTGGAAGTCGGCGTGCTGGCCAGTCGCCTACGCCTGCAGTCCGAACCG
GGGGAGGGGCTGGTGGAGGTGCCGATGGCGCGCATTGTCGAGTGCCGCGCCGATCGACGGGTGATTCTCGATGATGCCTT
CATCCCGACCGCCATCCGCATCGAAGGCGCCGCGCGGTTGTCCATGCTGCTGGCCGAATTGCTTGGGCTATTGCATCAAC
GCGGCCAGGCGCTGGCCGACCGCGTGGCCGGCAGCGACCGTAGCGGCGTGGCGGAAATCGCAGACGTGCTGATGTTGCAG
GTGATCAATCGCTACCAGCCGCTGGTGGCGCATTGGGCAAGCGCGCCGCTGGAGCATCCCGAAGCGCTGTATTGCGTGCT
GCTGGGGATGGCTGGCGAACTCGCGACCTTCACCCGTGCTAGTAAACGCAGCGGGCCATTTCCGCCGTACGCACACGATG
CGCTGCAGGCGAGCTTCGAGCCGGTGGTGGTGTCCTTGCGCGAAAGCTTGAGCGCGGTGCTCGAACAGTCGGCGATTGCC
GTGCCCTTGCAGCAACGCAAATACGGCGTGTGGGTGGGCATGGTGCCCGATCCGGCCTTGCTGGACGCGGCGGCCTTCGT
GCTGGCAGTCAAGGCGGATCTGCGCGCCGAGGATCTGCGCAAGCGGCTACCCGCCGAATCGAAGATCGGCCCGGTGGAGA
GGATTCGCGACCTGGTGAACCTGCAACTGCCCGGGGTGGCCGTGAGTGCGCTGGCGATGGCACCGCGGCAGGTGCCGTAT
CACGCCGGCTGCGCCTACTTCGAACTCGATCGGCAATCGTCGCTGTGGAAGACGCTGCGCACGTCCGGTGGCGTGGCGCT
GCATTTCGGCAGTGGTTTTCCCGGCCTGGAACTTGAGTTGTGGGCGGTGAGGAATTGA