Detailed information of component protein


Summary

Component ID T6CP015397
Component protein type TssM
T6SS ID (Type) T6SS01217 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (1153 a.a.); Nucleotide sequence (3459 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS10880
Coordinate (Strand) 2292018..2295476 (+)
NCBI ID WP_149621583.1
RefSeq NZ_CP043403
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 4.7e-89 200..456
IcmF-related PF06761.14 1.9e-57 511..808
IcmF_C PF06744.14 2.6e-16 1034..1134
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MRFVLD
Transmembrane helix 7-29 FLRVRYLASAAILSLLAVLVWVG
Outside 30-43 GPYLSLGRWQPFAS
Transmembrane helix 44-66 VSGRLLAMAVLVLAWAGWRYLRW
Inside 67-450 RRDSAKQQRLAAELVGQEARAEDASGNDSRARAAQEQVRLRARFTEAMAVLRRRRRNGPGLHVLPWYLLIGAPGSGKSTLLQSSGLEFPLKAHGTHAALEGVGGTRNCDWWFADQAVFLDSAGRYTTQDSDAIADAGAWHGFLDLLRRHRRQPLNGVIVTVSVAELLERDGDAGLSHARAVRHRLNELVEKLRARVPVYLIVTKCDLVSGFAEFFADLDAAGRAQVWGVSFPQTQAAGDTDPLTRFPTELERLLERIDQRVLERLHRARDARERAAVLSFPQQLRLLQPALMDVVQTAFGRHGYAGQPWLRGVYLSSGTQQGHPIDHVISAVAQHFGVAAAALPPVSSAPRSYFLSRLLKDVVFAEAGLAGSQPGSAQRRRLLQ
Transmembrane helix 451-473 LACWAVLTATTLGVLSGMAGSYA
Outside 474-1152 RNVRLIGQVRDALDAYPAGPLPADAGEAAFYAKALQRFDALAQARDAALPPGASIPWSRRFGLHQGTALARDVQEAYLRDLNGALLPALAQSLRRKLAQSSNDPQRLYPLLKGYLMLGDPTRRDAMHLATLADTVWRQIFPDDASVRAGLNLHLRALLGPVDGARALALDRQQIEQTRASLRTAELPALVYGGLKLTQPGVDAGQAPRLDRRLGLLSDVFERRSGLPLSAPLPPLFTRQAFQAQIGGGIAHGVQQFLADDWVLGTAPLDPLARSQLEREVLALYQRDYIAAWDSLLADLVLRPVVQTGQASAVAAKLGGPASPLKALLVLLREHTHALGRTPAAKAGAGAAAAADTAAADEPDVAAEPIERHFEPLTRLLDGGPGASALDETLAALTQMSRTLLGAAAGVAADQNAPALLIAAQQAEQLPPPLGNWMATLSGRGRALTASSVGEALRNAQRQAAGRECALLVSGRFPFVPGSNNEIPLRDFAELFAPGGRMDRFAQQALLGKVDTSGPRWKWNAGMAAAGADDVLARAQLADEIKQAFFAGGGAQPQVAFTVSIPPQAGIRRLQLEVDGQALDVRDGARATQSMTWPGPTPGLVRLAAWDASGQALPVVQYRGPWAWFRVMQAGRLHRSGDLDYTASLALGGTSVRMDIQPASLRHPFAASAVQRFSCL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9922 - -


  Protein sequence: 1153 a.a.    

>T6CP015397 NZ_CP043403:2292018-2295476 [Xanthomonas oryzae pv. oryzicola] [TssM]
MRFVLDFLRVRYLASAAILSLLAVLVWVGGPYLSLGRWQPFASVSGRLLAMAVLVLAWAGWRYLRWRRDSAKQQRLAAEL
VGQEARAEDASGNDSRARAAQEQVRLRARFTEAMAVLRRRRRNGPGLHVLPWYLLIGAPGSGKSTLLQSSGLEFPLKAHG
THAALEGVGGTRNCDWWFADQAVFLDSAGRYTTQDSDAIADAGAWHGFLDLLRRHRRQPLNGVIVTVSVAELLERDGDAG
LSHARAVRHRLNELVEKLRARVPVYLIVTKCDLVSGFAEFFADLDAAGRAQVWGVSFPQTQAAGDTDPLTRFPTELERLL
ERIDQRVLERLHRARDARERAAVLSFPQQLRLLQPALMDVVQTAFGRHGYAGQPWLRGVYLSSGTQQGHPIDHVISAVAQ
HFGVAAAALPPVSSAPRSYFLSRLLKDVVFAEAGLAGSQPGSAQRRRLLQLACWAVLTATTLGVLSGMAGSYARNVRLIG
QVRDALDAYPAGPLPADAGEAAFYAKALQRFDALAQARDAALPPGASIPWSRRFGLHQGTALARDVQEAYLRDLNGALLP
ALAQSLRRKLAQSSNDPQRLYPLLKGYLMLGDPTRRDAMHLATLADTVWRQIFPDDASVRAGLNLHLRALLGPVDGARAL
ALDRQQIEQTRASLRTAELPALVYGGLKLTQPGVDAGQAPRLDRRLGLLSDVFERRSGLPLSAPLPPLFTRQAFQAQIGG
GIAHGVQQFLADDWVLGTAPLDPLARSQLEREVLALYQRDYIAAWDSLLADLVLRPVVQTGQASAVAAKLGGPASPLKAL
LVLLREHTHALGRTPAAKAGAGAAAAADTAAADEPDVAAEPIERHFEPLTRLLDGGPGASALDETLAALTQMSRTLLGAA
AGVAADQNAPALLIAAQQAEQLPPPLGNWMATLSGRGRALTASSVGEALRNAQRQAAGRECALLVSGRFPFVPGSNNEIP
LRDFAELFAPGGRMDRFAQQALLGKVDTSGPRWKWNAGMAAAGADDVLARAQLADEIKQAFFAGGGAQPQVAFTVSIPPQ
AGIRRLQLEVDGQALDVRDGARATQSMTWPGPTPGLVRLAAWDASGQALPVVQYRGPWAWFRVMQAGRLHRSGDLDYTAS
LALGGTSVRMDIQPASLRHPFAASAVQRFSCL*

  Nucleotide sequence: 3459 bp    

>T6CP015397 NZ_CP043403:2292018-2295476 [Xanthomonas oryzae pv. oryzicola] [TssM]
ATGCGCTTTGTGCTCGATTTCCTGCGCGTCCGCTACCTCGCCAGCGCTGCCATCCTCAGTCTGTTGGCCGTCCTGGTGTG
GGTCGGCGGACCCTATCTCAGCCTGGGCCGCTGGCAGCCGTTTGCCAGCGTGAGCGGGCGCCTGCTTGCCATGGCCGTGC
TGGTGCTCGCGTGGGCAGGGTGGCGCTATCTGCGCTGGCGCCGCGACAGCGCCAAGCAGCAACGTCTGGCCGCCGAACTG
GTCGGGCAGGAAGCACGTGCCGAAGACGCCAGCGGCAACGACAGTCGCGCGCGTGCAGCACAGGAGCAGGTCCGCCTGCG
TGCGCGCTTTACCGAAGCCATGGCGGTGCTGCGCCGTCGCCGTCGCAACGGTCCCGGCCTGCACGTGCTGCCCTGGTATC
TGCTGATCGGCGCGCCCGGTTCCGGCAAGAGCACCTTGCTGCAGTCTTCGGGCCTGGAGTTCCCCCTCAAGGCACATGGC
ACCCACGCCGCGCTGGAAGGTGTCGGTGGCACGCGCAACTGCGATTGGTGGTTCGCCGACCAAGCAGTGTTCCTCGACAG
TGCCGGACGCTATACCACCCAGGATTCGGACGCCATCGCCGATGCCGGTGCCTGGCATGGCTTTCTGGACCTGCTGCGGC
GGCACCGCCGGCAGCCATTGAACGGCGTCATCGTGACCGTGAGCGTGGCCGAGCTGCTGGAGCGCGATGGCGATGCCGGT
CTGTCGCACGCGCGGGCAGTACGTCATCGACTGAACGAACTGGTCGAGAAACTGCGCGCACGCGTGCCGGTCTACCTGAT
CGTGACCAAATGCGATCTGGTGTCGGGCTTCGCCGAATTCTTCGCCGATCTGGATGCCGCCGGCCGCGCGCAGGTGTGGG
GGGTGTCGTTCCCACAGACGCAGGCCGCCGGTGACACCGATCCGTTGACGCGATTCCCCACCGAGCTCGAACGCCTGCTG
GAGCGGATCGATCAGCGCGTGCTGGAGCGCCTGCATCGGGCGCGCGATGCACGCGAGCGTGCCGCGGTGCTGTCCTTTCC
GCAGCAATTGCGGTTGCTTCAGCCAGCGCTGATGGACGTCGTGCAGACCGCGTTCGGCCGCCATGGCTATGCCGGCCAGC
CGTGGCTGCGTGGTGTCTATCTGAGCTCGGGGACGCAGCAAGGCCATCCGATCGACCACGTCATCTCGGCAGTGGCGCAA
CACTTCGGTGTTGCCGCCGCCGCTCTGCCGCCCGTCAGCAGCGCACCACGCAGTTACTTCCTGTCACGCCTGCTCAAGGA
CGTGGTCTTCGCCGAGGCGGGACTGGCCGGCAGCCAACCCGGCAGCGCGCAGCGCCGTCGGTTGCTGCAGCTGGCCTGCT
GGGCCGTGTTGACCGCCACCACCCTGGGCGTGCTGTCGGGCATGGCCGGCAGTTACGCCCGCAACGTGCGGCTGATCGGG
CAGGTGCGCGACGCGCTCGATGCCTATCCCGCCGGCCCGCTGCCCGCCGATGCAGGCGAGGCGGCCTTCTATGCAAAAGC
CTTGCAGCGTTTCGACGCGTTGGCGCAGGCGCGCGATGCGGCGCTGCCGCCGGGCGCGTCGATTCCGTGGTCGCGACGTT
TCGGGCTGCACCAGGGCACGGCCTTGGCGCGCGATGTGCAAGAAGCGTATCTGCGCGACCTCAATGGCGCGTTGCTGCCG
GCATTGGCGCAATCGTTGCGACGCAAGCTGGCGCAGTCCAGCAACGATCCGCAACGTCTGTATCCATTGTTGAAGGGCTA
CCTGATGCTGGGAGACCCGACACGGCGCGATGCAATGCATCTGGCCACGCTGGCAGACACGGTCTGGCGCCAGATATTTC
CCGACGATGCATCGGTGCGTGCGGGGTTGAACCTGCATCTGCGCGCCTTGCTGGGTCCGGTGGACGGCGCGCGCGCGCTT
GCGCTGGATCGGCAGCAGATCGAGCAGACACGGGCGAGCCTGCGAACCGCCGAACTGCCGGCACTGGTCTACGGTGGCCT
CAAGCTGACGCAGCCCGGGGTCGATGCCGGCCAGGCCCCACGCCTGGATCGCCGCCTGGGCCTGCTGAGTGATGTCTTCG
AACGCCGCAGTGGCCTGCCGTTGTCTGCGCCATTGCCCCCGCTGTTCACCCGTCAAGCGTTTCAAGCACAGATCGGCGGT
GGCATCGCGCATGGCGTGCAGCAGTTTCTCGCCGACGATTGGGTGTTGGGCACGGCACCGCTGGACCCATTGGCGCGCTC
GCAACTGGAGCGCGAGGTATTGGCGCTGTATCAGCGCGACTACATCGCCGCCTGGGACAGCCTGCTGGCCGATCTGGTGT
TGCGGCCGGTCGTGCAGACCGGGCAGGCGAGTGCGGTGGCCGCCAAGCTGGGTGGACCGGCATCGCCGCTGAAGGCGTTG
CTGGTGTTGCTGCGCGAGCACACCCACGCACTGGGGCGCACGCCTGCAGCGAAGGCCGGCGCGGGCGCTGCAGCTGCCGC
GGACACTGCTGCTGCGGACGAGCCGGATGTGGCAGCCGAACCGATCGAACGCCATTTCGAACCGCTCACTCGCCTGCTCG
ATGGTGGGCCGGGCGCCAGTGCGCTGGACGAAACCCTGGCCGCGCTGACCCAGATGAGCCGCACGCTGTTGGGAGCCGCC
GCTGGCGTGGCTGCCGACCAGAACGCCCCGGCGTTGCTGATCGCCGCGCAACAGGCCGAACAGCTGCCGCCGCCGCTGGG
CAACTGGATGGCGACCTTGTCCGGTCGTGGTCGCGCATTGACCGCCAGCAGCGTCGGCGAGGCATTGCGTAACGCGCAAC
GGCAAGCGGCCGGGCGTGAGTGCGCGCTGCTGGTGAGCGGGCGTTTCCCGTTCGTGCCGGGCAGCAACAACGAGATCCCG
CTGCGCGATTTCGCCGAACTGTTCGCACCCGGTGGGCGGATGGACCGGTTCGCGCAACAGGCGTTGCTCGGCAAGGTCGA
TACCAGCGGGCCTCGCTGGAAATGGAATGCAGGCATGGCTGCGGCTGGCGCAGACGACGTGCTGGCGCGCGCGCAACTGG
CCGACGAGATCAAGCAAGCATTCTTCGCCGGCGGCGGTGCGCAGCCGCAGGTCGCCTTCACTGTTTCCATTCCACCGCAA
GCAGGGATTCGCCGGCTGCAGCTGGAGGTGGATGGGCAAGCGCTGGACGTGCGCGATGGTGCGCGCGCCACCCAGTCGAT
GACCTGGCCTGGTCCAACGCCCGGTCTGGTGCGTCTGGCGGCGTGGGACGCCAGCGGACAGGCTTTGCCAGTGGTCCAAT
ACCGCGGCCCCTGGGCCTGGTTTCGGGTCATGCAGGCCGGGCGGCTGCACCGCAGCGGCGATCTGGATTACACCGCCAGC
CTCGCGCTGGGCGGCACCAGCGTGCGCATGGACATACAACCGGCCAGCCTGCGGCATCCCTTTGCGGCGTCGGCCGTGCA
GCGGTTCAGTTGCCTATGA