Detailed information of component protein
Summary
| Component ID | T6CP015397 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS01217  (Type i3) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (1153 a.a.); Nucleotide sequence (3459 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 2292018..2295476 (+) |
| NCBI ID | WP_149621583.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-6 | MRFVLD |
| Transmembrane helix | 7-29 | FLRVRYLASAAILSLLAVLVWVG |
| Outside | 30-43 | GPYLSLGRWQPFAS |
| Transmembrane helix | 44-66 | VSGRLLAMAVLVLAWAGWRYLRW |
| Inside | 67-450 | RRDSAKQQRLAAELVGQEARAEDASGNDSRARAAQEQVRLRARFTEAMAVLRRRRRNGPGLHVLPWYLLIGAPGSGKSTLLQSSGLEFPLKAHGTHAALEGVGGTRNCDWWFADQAVFLDSAGRYTTQDSDAIADAGAWHGFLDLLRRHRRQPLNGVIVTVSVAELLERDGDAGLSHARAVRHRLNELVEKLRARVPVYLIVTKCDLVSGFAEFFADLDAAGRAQVWGVSFPQTQAAGDTDPLTRFPTELERLLERIDQRVLERLHRARDARERAAVLSFPQQLRLLQPALMDVVQTAFGRHGYAGQPWLRGVYLSSGTQQGHPIDHVISAVAQHFGVAAAALPPVSSAPRSYFLSRLLKDVVFAEAGLAGSQPGSAQRRRLLQ |
| Transmembrane helix | 451-473 | LACWAVLTATTLGVLSGMAGSYA |
| Outside | 474-1152 | RNVRLIGQVRDALDAYPAGPLPADAGEAAFYAKALQRFDALAQARDAALPPGASIPWSRRFGLHQGTALARDVQEAYLRDLNGALLPALAQSLRRKLAQSSNDPQRLYPLLKGYLMLGDPTRRDAMHLATLADTVWRQIFPDDASVRAGLNLHLRALLGPVDGARALALDRQQIEQTRASLRTAELPALVYGGLKLTQPGVDAGQAPRLDRRLGLLSDVFERRSGLPLSAPLPPLFTRQAFQAQIGGGIAHGVQQFLADDWVLGTAPLDPLARSQLEREVLALYQRDYIAAWDSLLADLVLRPVVQTGQASAVAAKLGGPASPLKALLVLLREHTHALGRTPAAKAGAGAAAAADTAAADEPDVAAEPIERHFEPLTRLLDGGPGASALDETLAALTQMSRTLLGAAAGVAADQNAPALLIAAQQAEQLPPPLGNWMATLSGRGRALTASSVGEALRNAQRQAAGRECALLVSGRFPFVPGSNNEIPLRDFAELFAPGGRMDRFAQQALLGKVDTSGPRWKWNAGMAAAGADDVLARAQLADEIKQAFFAGGGAQPQVAFTVSIPPQAGIRRLQLEVDGQALDVRDGARATQSMTWPGPTPGLVRLAAWDASGQALPVVQYRGPWAWFRVMQAGRLHRSGDLDYTASLALGGTSVRMDIQPASLRHPFAASAVQRFSCL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9922 | - | - |
Protein sequence: 1153 a.a.
Nucleotide sequence: 3459 bp