SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015392
Component protein type	TssG
T6SS ID (Type)	T6SS01217 (Type i3)
Strain	Xanthomonas oryzae pv. oryzicola strain GX01
Replicon	chromosome
Sequence	Protein sequence (337 a.a.); Nucleotide sequence (1011 bp)
Reference	[1] Zhu PC, Li YM, Yang X, et al. Type VI secretion system is not required for virulence on rice but for inter-bacterial competition in Xanthomonas oryzae pv. oryzicola. Res Microbiol. 2020 Mar;171(2):64-73. doi: 10.1016/j.resmic.2019.10.004. Epub 2019 Oct 30. PMID: 31676435

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XOCgx_RS10825
Coordinate (Strand)	2279329..2280339 (+)
NCBI ID	WP_027703474.1
RefSeq	NZ_CP043403
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	7.3e-99	21..320

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-336	MASPSRQSADPVALFARLDAQPQAFELFEALRWLECAHPAQPRLGQAARPLEEPVRLGQRASLEFPPRDIDSVHAGVDGRPPTLRTLSLGLFGPHGALPLHLTEHAIERESAGDPTFAAFADMFHHRMIALWYRAWADARPTVQMDRVGDDRFGARLDALTGVDQPALRDRDAMPVAARRHFAGRFIAQARNAEGLRAVLTGLFDVPVQVQELVANWLTLPEEGRLRMGRAAARIGRDATLGASARNAQHRFRLRIGPLEIARYREFLPGGQALDVLTAAVRGYIGDEQAWDLQLVLAREDVPLPVLGQGQRIGLSLWLGHYRRPLDADQLVLTSP

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9748	-	-

Protein sequence: 337 a.a.

						>T6CP015392 NZ_CP043403:2279329-2280339 [Xanthomonas oryzae pv. oryzicola] [TssG]
MASPSRQSADPVALFARLDAQPQAFELFEALRWLECAHPAQPRLGQAARPLEEPVRLGQRASLEFPPRDIDSVHAGVDGR
PPTLRTLSLGLFGPHGALPLHLTEHAIERESAGDPTFAAFADMFHHRMIALWYRAWADARPTVQMDRVGDDRFGARLDAL
TGVDQPALRDRDAMPVAARRHFAGRFIAQARNAEGLRAVLTGLFDVPVQVQELVANWLTLPEEGRLRMGRAAARIGRDAT
LGASARNAQHRFRLRIGPLEIARYREFLPGGQALDVLTAAVRGYIGDEQAWDLQLVLAREDVPLPVLGQGQRIGLSLWLG
HYRRPLDADQLVLTSP*					

Nucleotide sequence: 1011 bp

						>T6CP015392 NZ_CP043403:2279329-2280339 [Xanthomonas oryzae pv. oryzicola] [TssG]
ATGGCCAGCCCATCTCGGCAATCGGCCGATCCTGTAGCGCTGTTCGCGCGGCTGGATGCGCAACCGCAGGCCTTCGAGCT
ATTCGAAGCGCTGCGGTGGCTGGAGTGCGCGCATCCGGCGCAACCGCGTCTGGGCCAGGCAGCACGGCCGTTGGAAGAGC
CTGTGCGTTTGGGCCAGCGCGCCTCGCTGGAATTTCCTCCGCGCGACATCGACAGCGTGCACGCTGGCGTTGACGGTCGC
CCGCCGACCCTGCGCACGCTGTCGCTGGGCTTGTTCGGCCCGCATGGTGCGCTGCCGTTGCACCTGACCGAGCACGCCAT
CGAACGTGAAAGCGCTGGCGATCCCACCTTTGCGGCCTTTGCCGACATGTTTCACCATCGCATGATTGCGCTGTGGTATC
GCGCCTGGGCCGATGCGCGACCCACCGTGCAGATGGATCGCGTGGGCGATGACCGCTTCGGCGCGCGGCTGGATGCGTTA
ACCGGTGTGGACCAACCTGCGTTACGTGATCGCGATGCGATGCCGGTTGCTGCACGCCGCCACTTCGCCGGTCGCTTCAT
TGCCCAGGCGCGCAATGCGGAAGGCTTGCGTGCTGTGCTGACCGGCCTGTTCGACGTCCCGGTGCAGGTGCAGGAATTGG
TTGCCAACTGGTTGACGCTGCCCGAGGAAGGGCGATTGCGGATGGGACGTGCTGCTGCGCGTATCGGGCGTGACGCCACG
CTTGGCGCATCGGCGCGCAACGCGCAGCATCGCTTTCGCCTGCGGATCGGCCCCTTGGAGATCGCCCGCTACCGCGAGTT
CCTGCCGGGCGGCCAGGCCCTGGACGTACTGACCGCCGCAGTACGCGGCTACATCGGCGACGAGCAGGCCTGGGACTTAC
AACTCGTGCTGGCGCGCGAAGACGTCCCGTTGCCAGTCCTGGGGCAGGGCCAGCGCATCGGCCTGTCGCTGTGGCTCGGC
CACTATCGCCGCCCGCTCGATGCCGACCAGCTCGTGCTTACGTCGCCCTGA					