Detailed information of component protein
Summary
| Component ID | T6CP015389 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01217  (Type i3) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XOCgx_RS10805 |
| Coordinate (Strand) | 2275621..2276124 (+) |
| NCBI ID | WP_024711385.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.8e-28 | 12..140 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-167 | MAFDMHLKFGSGDVEIKGASNHSKHKDQVPIIAWSWGTSNTGNLHTGAGYAAGGKANVKDISITKYVDSCSNALINACCTGARVDSATLYVTNATGEQSDYVTIELSEGVMITSVSTGGSGGEDRLTENVTLHFGKFKYSFQPQDDKGKKQGGTKDFTFNMQEVKKS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9173 | - | - |
Protein sequence: 168 a.a.
>T6CP015389 NZ_CP043403:2275621-2276124 [Xanthomonas oryzae pv. oryzicola] [TssD]
MAFDMHLKFGSGDVEIKGASNHSKHKDQVPIIAWSWGTSNTGNLHTGAGYAAGGKANVKDISITKYVDSCSNALINACCT
GARVDSATLYVTNATGEQSDYVTIELSEGVMITSVSTGGSGGEDRLTENVTLHFGKFKYSFQPQDDKGKKQGGTKDFTFN
MQEVKKS*
MAFDMHLKFGSGDVEIKGASNHSKHKDQVPIIAWSWGTSNTGNLHTGAGYAAGGKANVKDISITKYVDSCSNALINACCT
GARVDSATLYVTNATGEQSDYVTIELSEGVMITSVSTGGSGGEDRLTENVTLHFGKFKYSFQPQDDKGKKQGGTKDFTFN
MQEVKKS*
Nucleotide sequence: 504 bp
>T6CP015389 NZ_CP043403:2275621-2276124 [Xanthomonas oryzae pv. oryzicola] [TssD]
ATGGCTTTCGATATGCATCTCAAATTCGGCTCGGGCGACGTCGAGATCAAGGGCGCGTCCAACCATTCCAAGCACAAGGA
CCAAGTGCCGATCATTGCCTGGTCGTGGGGCACCAGCAACACCGGCAACCTGCATACCGGCGCCGGGTATGCAGCCGGCG
GCAAGGCCAATGTGAAGGATATTTCCATCACCAAGTACGTCGATAGTTGCTCCAATGCCTTGATCAACGCCTGCTGCACG
GGTGCGCGTGTGGATTCGGCCACGCTGTACGTCACCAACGCCACCGGCGAGCAGTCGGACTACGTGACGATCGAACTCAG
CGAAGGCGTGATGATCACCTCGGTGTCCACCGGCGGTAGCGGTGGCGAGGACCGTCTGACCGAAAACGTGACCCTGCATT
TCGGCAAGTTCAAGTATTCGTTCCAGCCGCAGGACGACAAGGGCAAGAAGCAGGGCGGCACCAAGGACTTCACGTTCAAC
ATGCAGGAAGTGAAGAAGTCCTGA
ATGGCTTTCGATATGCATCTCAAATTCGGCTCGGGCGACGTCGAGATCAAGGGCGCGTCCAACCATTCCAAGCACAAGGA
CCAAGTGCCGATCATTGCCTGGTCGTGGGGCACCAGCAACACCGGCAACCTGCATACCGGCGCCGGGTATGCAGCCGGCG
GCAAGGCCAATGTGAAGGATATTTCCATCACCAAGTACGTCGATAGTTGCTCCAATGCCTTGATCAACGCCTGCTGCACG
GGTGCGCGTGTGGATTCGGCCACGCTGTACGTCACCAACGCCACCGGCGAGCAGTCGGACTACGTGACGATCGAACTCAG
CGAAGGCGTGATGATCACCTCGGTGTCCACCGGCGGTAGCGGTGGCGAGGACCGTCTGACCGAAAACGTGACCCTGCATT
TCGGCAAGTTCAAGTATTCGTTCCAGCCGCAGGACGACAAGGGCAAGAAGCAGGGCGGCACCAAGGACTTCACGTTCAAC
ATGCAGGAAGTGAAGAAGTCCTGA