Detailed information of component protein


Summary

Component ID T6CP015386
Component protein type TssI
T6SS ID (Type) T6SS01217 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (921 a.a.); Nucleotide sequence (2763 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS10790
Coordinate (Strand) 2270145..2272907 (-)
NCBI ID WP_149621574.1
RefSeq NZ_CP043403
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.2e-73 47..355
DUF2345 PF10106.11 3.9e-32 725..886
T6SS_Vgr PF13296.8 2.9e-26 584..683
Phage_base_V PF04717.14 2.4e-11 486..532
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-920 MDPVATVLSALSAAPHQQERLLRLHTPLGPDVLVAETLDGRESVDGGGFRFDVGALSANAGLPLDDLLGQPVLLELLTAESRTALRPFHGHVTAFERLGSNGGLARYRLVVEPWLALLAQRVDSYVFQDMSVVEIAESVFADYAGQGALAPAWRWELSDRSTYARRSLTTQYEETDFAFLSRLLAEEGIAYWFEHTGAADSDTRGTHTLVLSDHNAAFADLGTVRYHRTDVTEQQDSVQQWVQAHRWRATSLSRASWDYRSRSLRLAGAEGTPLGDIGAEDVDTAGPYGWQDSTRGQRRAQQHLDAQQVTAQTIQGQGTWRQLAPGTRFGLRQHAVVAADAAFLCLQVRHQARNNLGAEVFDALEQALGAVAVAGAPLPPALAGLSGGYVPAQDEAAVEFYRNQFTAIPATATYRPQTEDGHGVRLHPKPTVVGTLSAIVVSDGDPVQSDRDHRIKVQFPFQRGADASSALAHPGGEDNAPGSASAWTWVRVMTPWAGDNWGGVVLPRKGQEVLVGFLEGDIDRPVVIGSVYNGRGQDDAAHNQVGGGGAGATGNAPAWFQGNAHGAVFTGFKSQALAQSQDGTGGYQQLRLDDTPGQGRAQLSTTQHASSLTLGHLKGGHDNLREGERGYGADLSTQAYGAVRAGQGLLLSSEPGNTQLAATGALSQLQQGSDLLKRLNDAARTQQAGLPSEPESLPTQDGLKTLQDHLQATHSGSAAGAIGGGAGEVPGWSAPVLLGSGQAGVMSLTPADQVWVSGTQTALLAGSALNWLSQGHLVLAVAGGLVLYTQGSDPVAGSPNQERGIALHAAQGTLSARAHRSTATLAAKTQVRIVSTTADVQLAAPTKHLLATAAGAYIKLDGDDIELGAPGVVAFKGGQQVLTGPQGASMSPVTPSASHKLCEYTARAADFAGAGTMGAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8882 - -


  Protein sequence: 921 a.a.    

>T6CP015386 NZ_CP043403:c2272907-2270145 [Xanthomonas oryzae pv. oryzicola] [TssI]
MDPVATVLSALSAAPHQQERLLRLHTPLGPDVLVAETLDGRESVDGGGFRFDVGALSANAGLPLDDLLGQPVLLELLTAE
SRTALRPFHGHVTAFERLGSNGGLARYRLVVEPWLALLAQRVDSYVFQDMSVVEIAESVFADYAGQGALAPAWRWELSDR
STYARRSLTTQYEETDFAFLSRLLAEEGIAYWFEHTGAADSDTRGTHTLVLSDHNAAFADLGTVRYHRTDVTEQQDSVQQ
WVQAHRWRATSLSRASWDYRSRSLRLAGAEGTPLGDIGAEDVDTAGPYGWQDSTRGQRRAQQHLDAQQVTAQTIQGQGTW
RQLAPGTRFGLRQHAVVAADAAFLCLQVRHQARNNLGAEVFDALEQALGAVAVAGAPLPPALAGLSGGYVPAQDEAAVEF
YRNQFTAIPATATYRPQTEDGHGVRLHPKPTVVGTLSAIVVSDGDPVQSDRDHRIKVQFPFQRGADASSALAHPGGEDNA
PGSASAWTWVRVMTPWAGDNWGGVVLPRKGQEVLVGFLEGDIDRPVVIGSVYNGRGQDDAAHNQVGGGGAGATGNAPAWF
QGNAHGAVFTGFKSQALAQSQDGTGGYQQLRLDDTPGQGRAQLSTTQHASSLTLGHLKGGHDNLREGERGYGADLSTQAY
GAVRAGQGLLLSSEPGNTQLAATGALSQLQQGSDLLKRLNDAARTQQAGLPSEPESLPTQDGLKTLQDHLQATHSGSAAG
AIGGGAGEVPGWSAPVLLGSGQAGVMSLTPADQVWVSGTQTALLAGSALNWLSQGHLVLAVAGGLVLYTQGSDPVAGSPN
QERGIALHAAQGTLSARAHRSTATLAAKTQVRIVSTTADVQLAAPTKHLLATAAGAYIKLDGDDIELGAPGVVAFKGGQQ
VLTGPQGASMSPVTPSASHKLCEYTARAADFAGAGTMGAA*

  Nucleotide sequence: 2763 bp    

>T6CP015386 NZ_CP043403:c2272907-2270145 [Xanthomonas oryzae pv. oryzicola] [TssI]
ATGGACCCGGTCGCCACAGTACTTTCCGCCCTCAGCGCCGCCCCGCACCAGCAAGAACGCCTGCTGCGGTTGCACACCCC
GCTGGGCCCCGACGTGCTGGTTGCCGAGACCCTGGATGGCCGCGAGTCGGTCGATGGCGGCGGCTTCCGTTTCGACGTGG
GCGCACTGTCGGCCAACGCCGGCCTGCCGCTGGACGACCTGCTCGGCCAGCCGGTGCTGCTGGAACTGCTCACCGCCGAG
TCGCGCACCGCGCTGCGCCCGTTCCACGGCCATGTCACCGCGTTCGAGCGGCTCGGCAGCAACGGCGGCCTGGCGCGCTA
CCGGCTGGTGGTGGAGCCGTGGCTGGCGCTGCTGGCCCAGCGCGTGGACAGCTACGTGTTCCAGGACATGAGCGTGGTGG
AGATCGCCGAGAGCGTGTTCGCCGACTACGCCGGGCAAGGCGCGCTGGCGCCGGCGTGGCGCTGGGAGCTGTCCGACCGC
AGCACGTACGCCAGGCGCAGCCTGACCACGCAATACGAAGAGACCGACTTCGCGTTCCTGAGCCGGCTGCTGGCCGAGGA
AGGCATCGCCTATTGGTTCGAGCACACCGGCGCAGCCGACAGCGATACGCGCGGCACGCACACGCTGGTGCTGTCGGACC
ATAACGCCGCCTTCGCCGACCTGGGCACGGTGCGCTACCACCGCACCGACGTCACCGAGCAGCAGGACAGCGTGCAGCAG
TGGGTACAGGCACATCGCTGGCGCGCGACCAGTCTGTCGCGGGCCAGCTGGGACTACCGCAGCCGCAGCCTGCGCCTGGC
CGGTGCCGAAGGCACGCCGCTGGGCGACATCGGTGCCGAGGACGTGGACACCGCCGGCCCCTACGGCTGGCAGGACAGCA
CGCGCGGCCAGCGCCGCGCGCAGCAGCATCTGGATGCGCAGCAGGTGACGGCGCAGACCATCCAGGGCCAGGGGACCTGG
CGGCAACTGGCACCGGGCACGCGTTTCGGGCTGCGCCAGCATGCGGTCGTGGCGGCCGATGCGGCGTTCCTGTGCCTGCA
GGTGCGGCACCAGGCGCGCAACAATCTGGGCGCGGAGGTGTTCGACGCGCTGGAGCAGGCGCTGGGCGCGGTGGCGGTGG
CCGGCGCGCCGCTGCCGCCGGCGCTGGCAGGCCTGAGCGGCGGATATGTGCCGGCGCAGGATGAGGCGGCGGTAGAGTTC
TACCGCAACCAGTTCACCGCCATACCGGCCACCGCGACCTACCGGCCGCAAACCGAGGACGGCCACGGCGTGCGCCTGCA
TCCCAAGCCAACGGTCGTCGGCACGCTGAGCGCGATCGTGGTCAGCGACGGCGACCCGGTGCAGTCCGACCGCGACCACC
GGATCAAGGTGCAGTTCCCGTTCCAGCGCGGGGCCGACGCCAGCAGCGCGCTGGCGCATCCGGGGGGCGAGGACAACGCG
CCGGGCAGCGCCTCGGCGTGGACCTGGGTGCGGGTGATGACGCCGTGGGCCGGGGACAACTGGGGCGGCGTGGTGCTGCC
GCGCAAGGGCCAGGAAGTGCTGGTGGGGTTCCTGGAAGGGGACATCGACCGGCCGGTGGTGATCGGCAGCGTGTACAACG
GGCGCGGCCAGGACGACGCGGCGCACAACCAGGTCGGCGGCGGCGGGGCCGGTGCCACCGGCAATGCGCCGGCGTGGTTC
CAGGGCAACGCGCACGGCGCGGTGTTCACCGGGTTCAAGAGCCAGGCGCTGGCGCAGAGCCAGGACGGCACCGGCGGCTA
CCAGCAGCTGCGGCTGGACGACACGCCCGGCCAGGGCCGCGCGCAGCTGTCGACCACCCAGCACGCCAGCAGCTTGACCC
TGGGCCACCTGAAGGGCGGCCACGACAACCTGCGCGAAGGCGAGCGCGGGTACGGGGCGGACCTGTCCACGCAGGCCTAC
GGCGCGGTGCGCGCCGGCCAGGGCCTGCTGCTGAGCAGCGAGCCGGGCAACACCCAACTGGCCGCCACCGGCGCGCTGAG
CCAACTGCAGCAGGGCAGCGACCTGCTCAAGCGCCTCAACGACGCCGCCCGCACCCAGCAGGCGGGCCTACCGAGCGAAC
CGGAGTCCCTGCCGACCCAGGACGGCCTGAAGACCTTGCAGGACCACCTGCAGGCCACCCACAGCGGCAGCGCGGCCGGC
GCGATCGGCGGTGGTGCCGGCGAGGTGCCCGGCTGGAGCGCCCCAGTGCTGCTGGGCAGCGGCCAGGCCGGCGTGATGAG
CCTGACCCCGGCCGACCAGGTGTGGGTGTCGGGCACCCAGACCGCGCTGCTGGCCGGCAGCGCACTGAACTGGCTGAGCC
AGGGCCACCTGGTGCTGGCGGTGGCCGGCGGGCTGGTGCTGTACACCCAGGGCAGCGACCCGGTCGCCGGCAGCCCCAAC
CAGGAGCGCGGCATCGCCCTGCACGCCGCGCAAGGCACGCTCAGCGCCCGCGCGCACAGGAGCACCGCCACCCTGGCCGC
CAAGACCCAGGTGCGCATCGTCAGCACCACCGCCGACGTCCAGCTCGCCGCGCCGACCAAGCACCTGCTGGCCACCGCGG
CCGGCGCCTACATCAAGCTGGACGGCGACGACATCGAACTGGGCGCGCCGGGGGTGGTCGCGTTCAAGGGCGGGCAGCAG
GTGTTGACCGGGCCGCAGGGGGCATCCATGAGCCCCGTGACGCCATCCGCCAGCCACAAGCTGTGTGAATACACCGCCCG
CGCGGCAGATTTCGCCGGTGCAGGGACGATGGGGGCCGCCTGA