Detailed information of component protein


Summary

Component ID T6CP015391
Component protein type TssF
T6SS ID (Type) T6SS01217 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (626 a.a.); Nucleotide sequence (1878 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS10820
Coordinate (Strand) 2277488..2279365 (+)
NCBI ID WP_047339877.1
RefSeq NZ_CP043403
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.2e-223 1..622
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-625 MDPRLLHHYNRELQHVREMGAEFAQAYPKVAGRLGMSGIDCADPYVERLLEGFAFLSARVQVELEAQQPAFAQHLTEMLYPHFLSPVPSMAVVELQPEQGEGIGPAGHVVPRGSALRSLIGHGDRTACEYRTAHAVTLLPLRLTAASYLTSPAALATLGVPVEPRARAGLRLVFNVDPGLRLDMLALDTLPIFITGADGLAGTLHEQLHANALGFVVRARSADGQVLTRTFGPEHLQPQGFDDEQALLPRSERSFSGYRLLQEYFACPERFLFTAFDGLAQVLTRAACAEFEILVWFDRSVERLDNAVDASNFRLYCTPAINLFPRRGDRIHLHPGISEHHVLADRTRPMDFEIHGVEQVEGFGDGNAPMQRFEPFYGAQPRSWHERRSAFYALRRQPRRLSTGQRRTGPRSSYVGSEVFLSLVDGDQAPYSHQLRQLGMQLWCSNRDLPLHMPVGKSSTDFVLDDGGPVASIRCVAGPTRPRSGVTAGDTRWRLISHLQLNYLSLLDAGDDGATALREMLTLYHDPHDAAARRQVDGVRRIASRPIVRRIPVPGPATYGRGLEITLTCDDAAFEGQGVYLLASVLRHVFARQASLNSFTETVLCTPERNEVARWPAHLGNRPIL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9854 - -


  Protein sequence: 626 a.a.    

>T6CP015391 NZ_CP043403:2277488-2279365 [Xanthomonas oryzae pv. oryzicola] [TssF]
MDPRLLHHYNRELQHVREMGAEFAQAYPKVAGRLGMSGIDCADPYVERLLEGFAFLSARVQVELEAQQPAFAQHLTEMLY
PHFLSPVPSMAVVELQPEQGEGIGPAGHVVPRGSALRSLIGHGDRTACEYRTAHAVTLLPLRLTAASYLTSPAALATLGV
PVEPRARAGLRLVFNVDPGLRLDMLALDTLPIFITGADGLAGTLHEQLHANALGFVVRARSADGQVLTRTFGPEHLQPQG
FDDEQALLPRSERSFSGYRLLQEYFACPERFLFTAFDGLAQVLTRAACAEFEILVWFDRSVERLDNAVDASNFRLYCTPA
INLFPRRGDRIHLHPGISEHHVLADRTRPMDFEIHGVEQVEGFGDGNAPMQRFEPFYGAQPRSWHERRSAFYALRRQPRR
LSTGQRRTGPRSSYVGSEVFLSLVDGDQAPYSHQLRQLGMQLWCSNRDLPLHMPVGKSSTDFVLDDGGPVASIRCVAGPT
RPRSGVTAGDTRWRLISHLQLNYLSLLDAGDDGATALREMLTLYHDPHDAAARRQVDGVRRIASRPIVRRIPVPGPATYG
RGLEITLTCDDAAFEGQGVYLLASVLRHVFARQASLNSFTETVLCTPERNEVARWPAHLGNRPIL*

  Nucleotide sequence: 1878 bp    

>T6CP015391 NZ_CP043403:2277488-2279365 [Xanthomonas oryzae pv. oryzicola] [TssF]
ATGGATCCGCGCCTGCTCCATCACTACAACCGCGAGTTGCAGCATGTGCGCGAGATGGGTGCGGAATTCGCGCAGGCATA
TCCGAAAGTGGCGGGCCGGCTTGGGATGAGCGGTATCGACTGCGCCGACCCGTATGTCGAACGTCTGCTGGAAGGGTTTG
CCTTCCTGTCTGCGCGCGTGCAGGTCGAACTCGAAGCCCAGCAGCCTGCATTCGCGCAGCATCTGACGGAAATGCTGTAT
CCACATTTCCTGTCGCCGGTGCCGTCGATGGCCGTGGTGGAGCTGCAACCGGAGCAAGGCGAGGGCATCGGCCCAGCGGG
GCACGTGGTGCCGCGCGGCAGCGCGTTGCGCTCGTTGATCGGGCATGGCGACCGCACCGCCTGCGAATATCGCACCGCGC
ATGCGGTGACGCTGTTGCCGCTGCGCCTGACTGCCGCCAGTTATCTCACCTCGCCGGCAGCGCTGGCCACGCTCGGTGTG
CCGGTCGAGCCGCGCGCGCGCGCCGGCCTTCGCCTGGTCTTCAACGTCGACCCCGGGCTGCGCCTGGACATGCTGGCGCT
GGACACATTGCCGATCTTCATCACCGGCGCAGATGGGTTGGCCGGCACCCTCCACGAACAACTGCATGCCAATGCGTTGG
GATTTGTGGTGCGTGCCCGCTCCGCGGATGGGCAGGTGCTGACGCGCACCTTCGGTCCCGAGCATCTGCAGCCGCAGGGC
TTCGATGACGAGCAGGCGCTGCTGCCGCGCAGCGAACGCTCTTTCAGCGGCTATCGCCTGCTGCAGGAATATTTTGCCTG
CCCCGAGCGTTTCCTGTTTACCGCCTTCGATGGCCTGGCGCAGGTGCTGACGCGAGCGGCGTGCGCCGAATTCGAGATAT
TGGTGTGGTTCGACCGCAGCGTCGAGCGGCTCGATAACGCGGTGGACGCAAGTAACTTCCGCCTGTATTGCACCCCGGCG
ATCAACCTGTTTCCTCGGCGCGGTGATCGTATCCATCTGCATCCCGGCATCTCCGAGCACCACGTGCTGGCCGACCGCAC
GCGGCCGATGGACTTCGAGATTCATGGCGTGGAGCAGGTCGAAGGCTTCGGCGATGGCAATGCGCCAATGCAGCGTTTCG
AGCCGTTCTATGGCGCGCAGCCGCGCAGTTGGCATGAGCGGCGTTCGGCATTTTATGCCTTGCGACGGCAGCCGCGGCGG
CTGTCGACGGGACAGCGTCGTACCGGGCCGCGCTCGAGCTACGTTGGCAGCGAGGTGTTCCTGTCGCTGGTCGATGGCGA
CCAGGCGCCGTATTCGCACCAACTGCGGCAACTGGGCATGCAGCTGTGGTGCAGCAACCGTGATCTGCCGCTGCATATGC
CGGTGGGCAAATCCAGCACCGACTTCGTCCTCGACGATGGCGGCCCGGTGGCGTCGATCCGCTGCGTTGCAGGTCCAACG
CGACCGCGCTCGGGCGTGACCGCCGGCGATACCCGTTGGCGCCTGATCAGCCATCTGCAGTTGAACTATCTCTCGCTGCT
GGATGCCGGCGACGACGGTGCCACCGCATTGCGCGAGATGCTCACGCTGTACCACGACCCGCACGATGCCGCTGCGCGAC
GACAGGTAGACGGCGTGCGCCGCATCGCTTCGCGCCCGATCGTACGGCGCATTCCGGTGCCGGGCCCGGCCACCTATGGC
CGCGGGCTTGAGATCACCTTGACCTGCGACGACGCGGCCTTTGAAGGGCAGGGCGTCTATCTGCTTGCCTCGGTGCTGCG
GCATGTCTTTGCGCGCCAGGCATCGCTCAATTCCTTTACCGAAACCGTGCTATGCACGCCCGAACGCAACGAGGTCGCTC
GATGGCCAGCCCATCTCGGCAATCGGCCGATCCTGTAG