Detailed information of component protein


Summary

Component ID T6CP015396
Component protein type TssL
T6SS ID (Type) T6SS01217 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS10875
Coordinate (Strand) 2290698..2292014 (+)
NCBI ID WP_149621582.1
RefSeq NZ_CP043403
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 8.9e-65 60..260
OmpA PF00691.22 5.9e-12 329..419
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-236 MSNTVDQHDDDATVVRSATPAPRPAASMPPRQAPTRTRRPPDLDAAMRATPGAMQGNAVVRAATPLLLLAVQLRHSTQTPEIATLRENCGTRLQRFEQELRQQGTDDKTGIAARYVLCTLLDEAVLAAPWGEASGWSQRTLLVTFHGETYGGAKVFDLLDRLARDPARHLDLLELLYLALALGFGGRYRVEQGGGARLADRQAELYQLIQRQRVPAPAELSPHWQGAQAPLLRNAA
Transmembrane helix 237-259 ATPLWIAALASLCIVLLAFVWLH
Inside 260-438 ARLNTLTAPISAQLARIGLERVALPIPAAARAATIPALAPLLAAEQRAGLLTVHTDGDGRSTVRLASASMFPSGSAELDSDQTHLLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVLAAGLRDRRRVQTSGAGDSQPIALPPQLPGNRARNRRVEILLIPET


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8444 - -


  Protein sequence: 439 a.a.    

>T6CP015396 NZ_CP043403:2290698-2292014 [Xanthomonas oryzae pv. oryzicola] [TssL]
MSNTVDQHDDDATVVRSATPAPRPAASMPPRQAPTRTRRPPDLDAAMRATPGAMQGNAVVRAATPLLLLAVQLRHSTQTP
EIATLRENCGTRLQRFEQELRQQGTDDKTGIAARYVLCTLLDEAVLAAPWGEASGWSQRTLLVTFHGETYGGAKVFDLLD
RLARDPARHLDLLELLYLALALGFGGRYRVEQGGGARLADRQAELYQLIQRQRVPAPAELSPHWQGAQAPLLRNAAATPL
WIAALASLCIVLLAFVWLHARLNTLTAPISAQLARIGLERVALPIPAAARAATIPALAPLLAAEQRAGLLTVHTDGDGRS
TVRLASASMFPSGSAELDSDQTHLLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVLAAGLRDR
RRVQTSGAGDSQPIALPPQLPGNRARNRRVEILLIPET*

  Nucleotide sequence: 1317 bp    

>T6CP015396 NZ_CP043403:2290698-2292014 [Xanthomonas oryzae pv. oryzicola] [TssL]
ATGAGCAACACGGTCGACCAGCACGACGACGATGCCACCGTGGTCCGCAGCGCGACGCCGGCGCCGCGGCCCGCCGCATC
CATGCCGCCCCGCCAAGCACCGACGCGGACGAGGCGACCGCCCGATCTGGATGCCGCCATGCGCGCGACGCCAGGTGCGA
TGCAGGGCAATGCGGTGGTGCGCGCAGCCACGCCGCTGCTGCTGCTGGCGGTGCAGTTGCGACACTCCACGCAGACGCCG
GAGATCGCCACCTTGCGCGAGAACTGCGGCACGCGCCTGCAGCGCTTCGAGCAGGAGCTGCGGCAACAGGGCACCGACGA
CAAGACCGGCATCGCCGCGCGCTACGTGCTGTGCACGTTGCTCGACGAAGCGGTGCTGGCCGCGCCCTGGGGCGAGGCCA
GCGGCTGGTCGCAGCGCACCTTGCTGGTGACGTTCCACGGCGAAACCTATGGCGGCGCCAAGGTCTTCGACCTGCTCGAT
CGGCTGGCACGCGATCCGGCGCGGCACCTGGACCTGCTGGAGCTGCTGTACCTGGCATTGGCGCTGGGCTTTGGTGGCCG
CTATCGGGTGGAGCAGGGTGGCGGGGCACGGCTGGCCGATCGCCAGGCCGAGCTCTACCAACTCATCCAGCGTCAGCGCG
TGCCTGCGCCTGCCGAGTTGTCGCCGCATTGGCAAGGCGCGCAGGCACCGTTGCTGCGCAATGCAGCGGCCACGCCGCTG
TGGATCGCGGCGCTGGCCTCGCTGTGCATCGTGTTGCTGGCGTTCGTGTGGTTGCATGCGCGCCTCAATACGCTGACCGC
GCCGATCAGCGCGCAGCTGGCGCGCATCGGCCTGGAGCGGGTGGCGTTGCCGATCCCGGCGGCAGCCAGAGCGGCGACCA
TACCGGCGCTTGCACCGCTGCTGGCGGCCGAGCAACGCGCAGGGTTGCTGACCGTCCACACCGACGGCGATGGCCGCAGC
ACCGTGCGCCTGGCCAGCGCATCCATGTTCCCCAGCGGCAGCGCGGAGTTGGATTCCGATCAGACCCACCTGCTCGAACG
CGTTGCTGCGGCGCTTGAACAGGTGCCGGGGCGGGTGGTGGTGGTGGGGCATACCGACGATCAGCCGGTGCGCTCGCTGC
GCTTCAAGGACAACTTCGCCTTATCCGCACGTCGCGCCGAGAGCGTGGGCGCCGTGTTGGCGGCAGGCCTGCGCGATCGA
CGCCGGGTACAGACCAGTGGCGCGGGCGATTCCCAGCCCATCGCGCTACCGCCGCAATTGCCCGGCAACCGTGCGCGCAA
TCGGCGCGTCGAGATCCTGTTGATTCCCGAGACCTGA