SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015398
Component protein type	TssA
T6SS ID (Type)	T6SS01217 (Type i3)
Strain	Xanthomonas oryzae pv. oryzicola strain GX01
Replicon	chromosome
Sequence	Protein sequence (343 a.a.); Nucleotide sequence (1029 bp)
Reference	[1] Zhu PC, Li YM, Yang X, et al. Type VI secretion system is not required for virulence on rice but for inter-bacterial competition in Xanthomonas oryzae pv. oryzicola. Res Microbiol. 2020 Mar;171(2):64-73. doi: 10.1016/j.resmic.2019.10.004. Epub 2019 Oct 30. PMID: 31676435

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XOCgx_RS10910
Coordinate (Strand)	2300235..2301263 (-)
NCBI ID	WP_047339870.1
RefSeq	NZ_CP043403
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
ImpA_N	PF06812.14	5.9e-29	9..132

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-342	MQIDNAPLLRPVDEQVPSGPNLEYTPEFQSLEELARPRQERALGAGVLVPDAPQWRQVAESAEHLLGRSKDLRLGILLSIARLHQDGLVGWSSGVGLLRQLLEQFWGDVHPHLDADEDNDPTERVNAIAALADSERTLTQLRNVRLFKGLHPGHFSLRDLRIVQGTLKLAAEDASEMPEPAAIDACLRDCPLEALLDLDAALAAAQDDIAAIAGVFAERTPGHGPELAPLTQDLDELRAFLRPYVSERSGSPAEPTEHAAPGADTVRTSTPRAHAVEHPDEVRRMLDQLCDYYARREPSSPVPLLLRRAQRLVGLDFAALIRDLAPRAIEELQVVSGQDHSD

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9586	-	-

Protein sequence: 343 a.a.

						>T6CP015398 NZ_CP043403:c2301263-2300235 [Xanthomonas oryzae pv. oryzicola] [TssA]
MQIDNAPLLRPVDEQVPSGPNLEYTPEFQSLEELARPRQERALGAGVLVPDAPQWRQVAESAEHLLGRSKDLRLGILLSI
ARLHQDGLVGWSSGVGLLRQLLEQFWGDVHPHLDADEDNDPTERVNAIAALADSERTLTQLRNVRLFKGLHPGHFSLRDL
RIVQGTLKLAAEDASEMPEPAAIDACLRDCPLEALLDLDAALAAAQDDIAAIAGVFAERTPGHGPELAPLTQDLDELRAF
LRPYVSERSGSPAEPTEHAAPGADTVRTSTPRAHAVEHPDEVRRMLDQLCDYYARREPSSPVPLLLRRAQRLVGLDFAAL
IRDLAPRAIEELQVVSGQDHSD*					

Nucleotide sequence: 1029 bp

						>T6CP015398 NZ_CP043403:c2301263-2300235 [Xanthomonas oryzae pv. oryzicola] [TssA]
ATGCAGATCGACAACGCACCGTTGCTGCGACCGGTCGACGAACAGGTGCCATCCGGTCCGAACCTGGAATACACCCCGGA
GTTCCAGAGCCTGGAGGAACTTGCACGACCGCGTCAGGAGCGCGCCTTGGGCGCTGGCGTGCTTGTGCCCGACGCGCCGC
AATGGCGCCAGGTCGCCGAGAGCGCCGAACACTTGCTAGGGCGCTCCAAGGACTTGCGGCTGGGCATCTTGCTGAGCATC
GCCCGCTTGCACCAGGACGGTCTGGTGGGCTGGTCCAGCGGCGTCGGCCTGCTCCGACAACTGCTGGAGCAGTTCTGGGG
CGACGTGCATCCTCATCTGGATGCCGATGAAGACAACGACCCGACCGAACGCGTCAACGCCATCGCTGCGTTGGCCGACA
GCGAGCGCACGCTGACACAGCTGCGCAACGTGCGCCTATTCAAGGGACTGCATCCAGGACATTTCTCGCTGCGCGATCTG
CGCATCGTGCAAGGCACGCTCAAGCTCGCTGCGGAGGACGCGAGCGAGATGCCAGAGCCTGCCGCCATCGATGCCTGCCT
GCGCGACTGCCCGCTGGAGGCGTTGCTTGATCTGGACGCGGCCCTGGCCGCTGCGCAGGACGACATTGCCGCAATTGCCG
GCGTGTTCGCCGAGCGCACTCCAGGGCACGGTCCGGAGCTGGCACCGCTCACGCAGGATCTGGACGAGTTGCGTGCGTTC
CTGCGGCCCTATGTGTCCGAACGTTCCGGATCCCCGGCCGAGCCGACCGAACATGCAGCACCGGGCGCGGACACTGTCAG
GACATCGACGCCACGCGCGCACGCCGTGGAGCATCCGGACGAGGTTCGCCGCATGCTCGACCAGCTCTGCGATTACTACG
CGCGGCGCGAGCCCTCCAGCCCGGTGCCGTTACTGTTGCGGCGCGCACAACGCCTGGTCGGCCTGGATTTCGCCGCACTG
ATACGCGATCTCGCGCCGCGCGCGATTGAAGAGCTGCAAGTGGTGTCGGGCCAGGACCATTCCGACTAG					