Detailed information of component protein


Summary

Component ID T6CP015394
Component protein type TssI
T6SS ID (Type) T6SS01217 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (646 a.a.); Nucleotide sequence (1938 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS10855
Coordinate (Strand) 2285456..2287393 (+)
NCBI ID WP_041183296.1
RefSeq NZ_CP043403
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.8e-83 23..327
Phage_base_V PF04717.14 2.3e-11 386..454
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-645 MAHAITLQSPLGKTLRFVRMSAHEALGRPYAFALHGISRDVAIDLRALLGKPMAVKITSPQGYVRHYHGIVAEAEQTGFEQIEGLRYATYAFSLVPKLWLLGQRRDCRIYKNKSVPELVRALLAEVGCTDVKLRLSASYTPREYCVQYRESALDFISRLMEQEGIYYYFAHSASTHTLVLADSLGAHESSAPFAQIPYCPPGQKGSRMKDAITDWSLARSAHSTRVRLDDYDYLKPKASLRVDETPAESSGPALGELDVFDYPGEHLDVAAGRRHAQVRAEALNVAQAQYQGWTDACGLQVGALFKLRDFPLAEHNQEYLVTSADTELVEVDYVSGGQTVAEPFASTFRALRSRQPFRTPQTTPRPSIAGVQTALVDGNKAEDIAVDQYGRVQVNFFWSPPGTPNAVCSCPVRVAQSWAGKRWGAQHIPRVGQEVVVSFLEGNPDRPLIIGSVYNADQLPPYALPEHRTRSGVKSRSLSGGAEDYNEIRFDDKKGNEELLLHAQRDLRHEAENDHFVTVDRNETAEIKRERSHTVGGNDRLDVGKTLRIQAGSEIALVTGMARLQLKASGEIVLSGTRLTLDGRVSVGIQGGVSVDVSAMANLTLRSNASVLLQSNAVTTARANAALLLQSSGPAVLKGTPPIIA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9857 - -


  Protein sequence: 646 a.a.    

>T6CP015394 NZ_CP043403:2285456-2287393 [Xanthomonas oryzae pv. oryzicola] [TssI]
MAHAITLQSPLGKTLRFVRMSAHEALGRPYAFALHGISRDVAIDLRALLGKPMAVKITSPQGYVRHYHGIVAEAEQTGFE
QIEGLRYATYAFSLVPKLWLLGQRRDCRIYKNKSVPELVRALLAEVGCTDVKLRLSASYTPREYCVQYRESALDFISRLM
EQEGIYYYFAHSASTHTLVLADSLGAHESSAPFAQIPYCPPGQKGSRMKDAITDWSLARSAHSTRVRLDDYDYLKPKASL
RVDETPAESSGPALGELDVFDYPGEHLDVAAGRRHAQVRAEALNVAQAQYQGWTDACGLQVGALFKLRDFPLAEHNQEYL
VTSADTELVEVDYVSGGQTVAEPFASTFRALRSRQPFRTPQTTPRPSIAGVQTALVDGNKAEDIAVDQYGRVQVNFFWSP
PGTPNAVCSCPVRVAQSWAGKRWGAQHIPRVGQEVVVSFLEGNPDRPLIIGSVYNADQLPPYALPEHRTRSGVKSRSLSG
GAEDYNEIRFDDKKGNEELLLHAQRDLRHEAENDHFVTVDRNETAEIKRERSHTVGGNDRLDVGKTLRIQAGSEIALVTG
MARLQLKASGEIVLSGTRLTLDGRVSVGIQGGVSVDVSAMANLTLRSNASVLLQSNAVTTARANAALLLQSSGPAVLKGT
PPIIA*

  Nucleotide sequence: 1938 bp    

>T6CP015394 NZ_CP043403:2285456-2287393 [Xanthomonas oryzae pv. oryzicola] [TssI]
ATGGCCCACGCCATTACCCTGCAGTCGCCGCTTGGCAAGACGCTGCGCTTTGTGCGGATGAGCGCGCACGAGGCGCTGGG
GCGGCCCTATGCGTTCGCGTTGCACGGCATCAGCCGCGATGTGGCGATCGACCTGCGCGCTCTGCTGGGCAAGCCGATGG
CGGTCAAGATCACTTCACCGCAGGGCTATGTGCGGCATTACCACGGCATCGTCGCCGAGGCGGAGCAGACCGGGTTCGAG
CAGATCGAGGGGCTGCGCTACGCCACCTATGCCTTCTCGCTGGTGCCCAAGCTGTGGTTGCTCGGGCAGCGCCGCGATTG
CCGCATCTACAAGAACAAGAGCGTGCCGGAGCTGGTGCGCGCGTTGCTGGCCGAGGTTGGATGCACCGACGTGAAGCTGC
GCCTGAGCGCGAGCTACACGCCGCGCGAATACTGCGTGCAGTACCGCGAGAGCGCGCTGGACTTCATCAGCCGCTTGATG
GAGCAAGAGGGCATCTACTACTACTTCGCACACAGTGCCAGCACGCATACGCTGGTGCTGGCCGACAGTCTCGGCGCGCA
CGAATCCTCTGCGCCATTCGCACAAATCCCTTACTGCCCGCCCGGGCAGAAGGGCAGCCGGATGAAGGACGCGATCACCG
ATTGGTCGCTGGCGCGCAGCGCGCACAGCACGCGCGTGCGCCTGGACGACTACGACTATCTCAAGCCCAAGGCCTCGCTG
CGGGTGGACGAGACACCGGCCGAGTCTTCGGGACCGGCGCTGGGCGAGCTGGATGTGTTCGATTATCCCGGCGAGCATCT
CGATGTCGCGGCCGGTCGTCGTCACGCGCAGGTGCGTGCCGAAGCGCTCAACGTGGCGCAGGCGCAATACCAGGGCTGGA
CCGATGCCTGCGGTTTGCAGGTGGGCGCATTGTTCAAGCTGCGCGACTTTCCGCTGGCCGAGCACAACCAGGAATACCTG
GTGACCAGCGCGGACACCGAACTGGTTGAAGTGGATTATGTGTCCGGTGGCCAGACGGTTGCCGAGCCGTTTGCGTCCAC
CTTCCGTGCGCTACGCAGTCGGCAGCCGTTTCGCACCCCGCAGACCACGCCGCGTCCGAGTATTGCCGGGGTGCAGACCG
CGCTCGTCGACGGCAACAAGGCCGAGGATATTGCGGTCGATCAGTACGGCCGTGTGCAGGTGAATTTCTTCTGGAGTCCG
CCGGGAACGCCAAACGCCGTCTGCTCGTGCCCGGTACGCGTGGCGCAGTCGTGGGCGGGCAAACGCTGGGGCGCACAGCA
CATTCCGCGTGTGGGCCAGGAGGTGGTGGTGAGCTTTCTGGAAGGCAATCCGGATCGTCCGCTGATCATCGGCAGCGTCT
ACAACGCCGACCAGCTGCCACCGTATGCACTGCCCGAGCACCGCACCCGTAGCGGGGTAAAGAGCCGCAGCCTGTCGGGT
GGGGCAGAGGACTACAACGAGATCCGTTTCGACGACAAGAAGGGCAACGAAGAGCTGCTGCTGCATGCGCAGCGCGATCT
GCGCCACGAAGCGGAGAACGACCATTTCGTCACTGTCGACCGCAACGAAACCGCCGAGATCAAACGCGAACGCAGCCACA
CCGTTGGCGGCAACGACCGTCTGGACGTGGGCAAGACACTCCGCATCCAGGCAGGGAGCGAGATCGCGTTGGTGACCGGG
ATGGCTCGCCTGCAGTTGAAGGCCAGCGGCGAGATCGTGCTCAGCGGCACCCGGCTCACGCTCGATGGACGCGTCAGCGT
CGGTATCCAGGGTGGCGTCAGTGTCGATGTCAGCGCGATGGCCAACCTGACCCTGCGCTCGAACGCGTCGGTGCTGCTGC
AATCCAACGCCGTGACCACCGCGCGCGCCAACGCGGCGCTGCTGTTGCAGTCGTCCGGTCCGGCCGTGCTCAAGGGCACT
CCGCCCATCATCGCTTGA