Detailed information of component protein
Summary
| Component ID | T6CP015390 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01217  (Type i3) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XOCgx_RS10815 |
| Coordinate (Strand) | 2276981..2277484 (+) |
| NCBI ID | WP_149621576.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 3.2e-18 | 39..142 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-167 | MAELTQQERLQPSLLDRLIDDRRHEPAERRDARAISPAKLRDCVMRDLAWLLNCTRHWHEDALQAYPHVASSVLNYGIPDLAGARLAGLDVIALQNRIREAIVAFEPRLAAASLQVTAKVDIGRMDRMSLSFVIDSELWAQPLPLALYLRTDLDLETGRFSLSSAGH |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9958 | - | - |
Protein sequence: 168 a.a.
>T6CP015390 NZ_CP043403:2276981-2277484 [Xanthomonas oryzae pv. oryzicola] [TssE]
MAELTQQERLQPSLLDRLIDDRRHEPAERRDARAISPAKLRDCVMRDLAWLLNCTRHWHEDALQAYPHVASSVLNYGIPD
LAGARLAGLDVIALQNRIREAIVAFEPRLAAASLQVTAKVDIGRMDRMSLSFVIDSELWAQPLPLALYLRTDLDLETGRF
SLSSAGH*
MAELTQQERLQPSLLDRLIDDRRHEPAERRDARAISPAKLRDCVMRDLAWLLNCTRHWHEDALQAYPHVASSVLNYGIPD
LAGARLAGLDVIALQNRIREAIVAFEPRLAAASLQVTAKVDIGRMDRMSLSFVIDSELWAQPLPLALYLRTDLDLETGRF
SLSSAGH*
Nucleotide sequence: 504 bp
>T6CP015390 NZ_CP043403:2276981-2277484 [Xanthomonas oryzae pv. oryzicola] [TssE]
ATGGCCGAACTGACCCAACAAGAGCGTTTGCAGCCATCGCTGCTGGACCGATTGATCGACGACCGCCGACACGAACCGGC
GGAACGCCGCGACGCGCGGGCGATCAGTCCAGCCAAGCTGCGCGACTGCGTCATGCGCGACCTGGCCTGGCTGCTCAATT
GCACGCGCCACTGGCATGAGGATGCGTTGCAGGCGTATCCGCACGTCGCCAGCTCGGTACTCAATTACGGCATTCCCGAC
CTGGCCGGCGCACGGCTGGCGGGGCTGGACGTGATCGCACTGCAGAACCGCATTCGTGAGGCGATTGTGGCGTTCGAGCC
GCGCCTGGCTGCGGCCAGCCTGCAGGTCACCGCGAAAGTGGATATCGGGCGCATGGACCGCATGTCGCTGTCCTTCGTCA
TCGATTCCGAATTGTGGGCACAGCCGCTGCCGCTGGCGCTGTATCTGCGCACCGATCTCGATCTGGAAACCGGTCGTTTC
AGTCTGTCTTCGGCAGGCCACTGA
ATGGCCGAACTGACCCAACAAGAGCGTTTGCAGCCATCGCTGCTGGACCGATTGATCGACGACCGCCGACACGAACCGGC
GGAACGCCGCGACGCGCGGGCGATCAGTCCAGCCAAGCTGCGCGACTGCGTCATGCGCGACCTGGCCTGGCTGCTCAATT
GCACGCGCCACTGGCATGAGGATGCGTTGCAGGCGTATCCGCACGTCGCCAGCTCGGTACTCAATTACGGCATTCCCGAC
CTGGCCGGCGCACGGCTGGCGGGGCTGGACGTGATCGCACTGCAGAACCGCATTCGTGAGGCGATTGTGGCGTTCGAGCC
GCGCCTGGCTGCGGCCAGCCTGCAGGTCACCGCGAAAGTGGATATCGGGCGCATGGACCGCATGTCGCTGTCCTTCGTCA
TCGATTCCGAATTGTGGGCACAGCCGCTGCCGCTGGCGCTGTATCTGCGCACCGATCTCGATCTGGAAACCGGTCGTTTC
AGTCTGTCTTCGGCAGGCCACTGA