Detailed information of component protein


Summary

Component ID T6CP015388
Component protein type TssC
T6SS ID (Type) T6SS01217 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (505 a.a.); Nucleotide sequence (1515 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS10800
Coordinate (Strand) 2274007..2275521 (+)
NCBI ID WP_149621575.1
RefSeq NZ_CP043403
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.5e-134 75..376
VipB_2 PF18945.2 2.5e-43 387..498
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-504 MRNLMATQHSAAQDLADAQPQTSQSDNFAALLTREFRPRSERAGEEVRLAVRTLAEQVLERSDIISDDLAQTINAYVAEIDRKISEQLNLILHAPQFQALEGAWRGLHYLVSNTESDTQLKIRVLNVSKRELAKNLKRFKGTAWDQSPVFKKIYEAEYGQLGGEPYGCLIGDYHFDHSPQDVDTLRGISQIAAASHAPFIAAAGPGLMGMESWSELSNPRDLAKIFSTPDYAAWRSLRQSEDAKYLALAMPRTLARLPYGAKTDPVEAFDFEEDTQGADSSRYTWQNAAYAMAVNINRSFKQYGWCTRIRGVESGGAVEGLPTHTFPADDGGVDMKCPTEVAITDRRSAELDKMGLMPLVHRKNTDMAAFISAQSLGKPEEYDDPDATANAALSARLPYMFACCRFAHYLKCIVRDKIGSFSTRQQMQSWLTDWVMNYVDGDPANSSEETKARKPLAAAEVVVEEVEGNPGYYTSKFFLRPHYQLEGLTVSLRLVSRLPSAQAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9662 - -


  Protein sequence: 505 a.a.    

>T6CP015388 NZ_CP043403:2274007-2275521 [Xanthomonas oryzae pv. oryzicola] [TssC]
MRNLMATQHSAAQDLADAQPQTSQSDNFAALLTREFRPRSERAGEEVRLAVRTLAEQVLERSDIISDDLAQTINAYVAEI
DRKISEQLNLILHAPQFQALEGAWRGLHYLVSNTESDTQLKIRVLNVSKRELAKNLKRFKGTAWDQSPVFKKIYEAEYGQ
LGGEPYGCLIGDYHFDHSPQDVDTLRGISQIAAASHAPFIAAAGPGLMGMESWSELSNPRDLAKIFSTPDYAAWRSLRQS
EDAKYLALAMPRTLARLPYGAKTDPVEAFDFEEDTQGADSSRYTWQNAAYAMAVNINRSFKQYGWCTRIRGVESGGAVEG
LPTHTFPADDGGVDMKCPTEVAITDRRSAELDKMGLMPLVHRKNTDMAAFISAQSLGKPEEYDDPDATANAALSARLPYM
FACCRFAHYLKCIVRDKIGSFSTRQQMQSWLTDWVMNYVDGDPANSSEETKARKPLAAAEVVVEEVEGNPGYYTSKFFLR
PHYQLEGLTVSLRLVSRLPSAQAA*

  Nucleotide sequence: 1515 bp    

>T6CP015388 NZ_CP043403:2274007-2275521 [Xanthomonas oryzae pv. oryzicola] [TssC]
ATGCGTAACCTCATGGCGACCCAACATTCCGCTGCCCAAGATCTCGCCGACGCGCAGCCGCAAACCAGTCAGAGCGACAA
CTTTGCGGCCCTGCTGACCCGCGAATTCCGTCCGCGTAGCGAACGCGCCGGCGAAGAAGTGCGGTTGGCTGTGCGCACCT
TGGCCGAACAGGTGCTGGAACGCAGCGACATCATCAGCGACGACCTCGCGCAGACAATCAACGCGTATGTCGCCGAGATC
GACCGCAAGATCAGCGAGCAACTCAACCTCATCCTGCACGCCCCGCAATTCCAGGCGCTGGAGGGTGCATGGCGCGGACT
GCATTATCTGGTCAGCAACACCGAATCGGACACGCAGTTGAAGATCCGCGTGCTCAACGTGTCCAAAAGGGAGCTCGCCA
AGAACCTCAAGCGCTTCAAGGGCACCGCCTGGGACCAGAGCCCGGTATTCAAGAAAATTTACGAAGCCGAGTACGGCCAG
CTGGGTGGCGAACCCTACGGCTGTTTGATTGGCGATTACCACTTCGACCATAGCCCGCAGGATGTCGACACGCTGCGCGG
CATCAGCCAGATTGCCGCCGCCTCGCATGCGCCCTTCATCGCCGCTGCGGGTCCTGGCCTGATGGGGATGGAAAGCTGGA
GCGAGCTGTCCAACCCGCGCGATCTGGCCAAGATTTTTTCTACCCCCGATTACGCGGCTTGGCGTTCGTTGCGTCAGAGC
GAGGATGCCAAGTACCTGGCGCTCGCCATGCCGCGCACGCTGGCGCGGCTGCCGTACGGAGCCAAGACCGATCCGGTGGA
AGCGTTCGACTTCGAAGAAGACACCCAGGGCGCCGATTCGTCGCGCTACACCTGGCAAAACGCCGCCTACGCGATGGCGG
TCAACATCAACCGCTCCTTCAAGCAGTACGGTTGGTGCACCCGCATTCGCGGCGTGGAGTCGGGTGGGGCGGTGGAAGGC
CTGCCGACGCATACCTTCCCTGCCGACGATGGCGGTGTGGACATGAAGTGCCCGACCGAGGTCGCGATTACCGACCGCCG
TTCGGCCGAACTCGACAAGATGGGTCTGATGCCGCTGGTACATCGCAAGAACACCGACATGGCAGCCTTCATCAGCGCAC
AGTCGCTGGGCAAGCCCGAGGAATACGACGACCCGGATGCCACCGCCAACGCGGCGCTGAGCGCACGCCTGCCGTATATG
TTCGCTTGCTGCCGCTTCGCGCACTATTTGAAGTGCATCGTGCGCGACAAGATCGGCTCGTTCAGCACGCGCCAGCAGAT
GCAGAGCTGGTTGACCGATTGGGTGATGAACTACGTCGACGGCGACCCGGCCAATTCCAGCGAAGAAACCAAGGCGCGTA
AGCCATTGGCTGCTGCCGAAGTGGTCGTCGAAGAGGTCGAGGGCAACCCCGGCTACTACACCTCCAAGTTCTTCCTGCGC
CCGCATTACCAGCTCGAAGGCCTGACGGTATCGCTACGCCTGGTCTCGCGCTTGCCATCGGCGCAGGCAGCCTGA