Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00431  |
| T6SS type | Type i4a |
| Strain | Pseudomonas brassicacearum subsp. brassicacearum NFM421 |
| Replicon (RefSeq) | chromosome (NC_015379) |
| Location | 4092891..4112084 |
| Function | - |
| Comment | - |
| References | [1] Ortet P et al (2011) Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum. J Bacteriol. 193(12):3146. [PudMed:21515771] [2] Lalaouna D et al (2012) Phenotypic switching in Pseudomonas brassicacearum involves GacS- and GacA-dependent Rsm small RNAs. Appl Environ Microbiol. 78(6):1658-65. [PudMed:22247157] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PSEBR_RS17590 | 4089946..4091226 | - | 1281 | WP_003202785.1 | HAAAP family serine/threonine permease | ||
| PSEBR_RS17595 | 4091941..4092894 | + | 954 | WP_003202786.1 | 2-hydroxyacid dehydrogenase | ||
| T6CP004472 | TssA | PSEBR_RS17600 (tssA) | 4092891..4093973 | - | 1083 | WP_013693575.1 | type VI secretion system protein TssA |
| T6CP004473 | TssM | PSEBR_RS17605 | 4093970..4097794 | - | 3825 | WP_003202790.1 | type VI secretion system protein ImpL |
| T6CP008918 | TssL | PSEBR_RS17610 | 4097791..4098552 | - | 762 | WP_003202792.1 | DotU family type IV/VI secretion system protein |
| T6CP004474 | TssK | PSEBR_RS17615 (tssK) | 4098571..4099902 | - | 1332 | WP_003202794.1 | type VI secretion system baseplate subunit TssK |
| PSEBR_RS17620 | 4099967..4100416 | - | 450 | WP_013693577.1 | hypothetical protein | ||
| T6CP004475 | TssB | PSEBR_RS17625 (tssB) | 4100641..4101201 | + | 561 | WP_003202799.1 | type VI secretion system contractile sheath small subunit |
| T6CP004476 | TssC | PSEBR_RS17630 (tssC) | 4101232..4102713 | + | 1482 | WP_003202801.1 | type VI secretion system contractile sheath large subunit |
| T6CP004477 | TssD | PSEBR_RS17635 | 4102906..4103403 | + | 498 | WP_003202803.1 | type VI secretion system tube protein Hcp |
| T6CP009656 | TssE | PSEBR_RS17640 (tssE) | 4103417..4103860 | + | 444 | WP_003202805.1 | type VI secretion system baseplate subunit TssE |
| T6CP004478 | TssF | PSEBR_RS17645 (tssF) | 4103844..4105634 | + | 1791 | WP_003202807.1 | type VI secretion system baseplate subunit TssF |
| T6CP004479 | TssG | PSEBR_RS17650 (tssG) | 4105598..4106623 | + | 1026 | WP_013693578.1 | type VI secretion system baseplate subunit TssG |
| T6CP004480 | TssH | PSEBR_RS17655 (tssH) | 4106625..4109168 | + | 2544 | WP_013693579.1 | type VI secretion system ATPase TssH |
| PSEBR_RS17660 | 4109197..4109937 | + | 741 | WP_003202811.1 | hypothetical protein | ||
| T6CP004481 | TssI | PSEBR_RS17665 (tssI) | 4110075..4112084 | + | 2010 | WP_013693580.1 | type VI secretion system tip protein VgrG |
| PSEBR_RS17670 | 4112098..4112640 | + | 543 | WP_003202816.1 | toxin-antitoxin system YwqK family antitoxin | ||
| PSEBR_RS17675 | 4112683..4113078 | - | 396 | WP_003202818.1 | DUF4280 domain-containing protein | ||
| PSEBR_RS17680 | 4113264..4114331 | + | 1068 | WP_003202820.1 | phosphotransferase family protein | ||
| PSEBR_RS17685 | 4114356..4115123 | + | 768 | WP_003180553.1 | SDR family oxidoreductase | ||
| PSEBR_RS17690 | 4115358..4116473 | + | 1116 | WP_003202822.1 | Gfo/Idh/MocA family oxidoreductase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0351 |
PSEBR_RS22825 (GacS) | protein | TCS-RR | Pseudomonas brassicacearum subsp. brassicacearum NFM421 | chromosome (NC_015379) | 5188012..5190762 (+) | 503459407 | hcp1 transcript (↓); hcp2 transcript (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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