Detailed information of component protein


Summary

Component ID T6CP004479
Component protein type TssG
T6SS ID (Type) T6SS00431 insolico (Type i4a)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (342 a.a.); Nucleotide sequence (1026 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS17650
Coordinate (Strand) 4105598..4106623 (+)
NCBI ID WP_013693578.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 7.6e-78 22..320
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 342 a.a.    

>T6CP004479 NC_015379:4105598-4106623 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssG]
MATPSRQTPGALNLSQRLRRDPQRFEWLQALLLLEREHPQAEPLGSGTAPHAEALRLRGPLTPLFAASEVESLSQEPGLP
PTLTTPIFGLGGPDGPLPYAYQEWLQQRARAKDHAPAEFLDLFQHRLLSLLYKVMRKHRIAVGFTAPGASAVHAQLRALT
GLLPKALQERQAAPDSAVLACTALYADGRRSLDGFAAIVREQFGLPVELTAYEGGWREIPPASRSRLQPGGRNLCLGRNA
VTGTHVWDEHAGVRLTLGPLTTGQASALLPNGEAHALLASLYALYFGPDLDCTLVLLIRGAGPLQLDRQAAPRLNWNGGL
QRQPTLAVQRIETRLRQPEIA*

  Nucleotide sequence: 1026 bp    

>T6CP004479 NC_015379:4105598-4106623 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssG]
ATGGCAACCCCAAGCCGGCAAACCCCTGGTGCTCTGAACCTGAGCCAGCGCCTGCGCCGCGACCCGCAACGCTTCGAATG
GCTCCAGGCCTTGCTGCTGCTCGAACGTGAACATCCCCAGGCCGAGCCCTTGGGCAGCGGCACCGCGCCGCACGCCGAAG
CCTTGCGTCTGCGCGGGCCCTTGACGCCGTTGTTCGCCGCCAGTGAAGTCGAGAGCCTGAGCCAGGAACCCGGCCTGCCG
CCAACCCTGACCACGCCGATCTTCGGCCTCGGCGGCCCCGACGGCCCGTTGCCCTACGCCTACCAGGAATGGCTGCAACA
ACGGGCACGGGCGAAGGACCACGCCCCGGCGGAATTCCTCGACCTGTTCCAGCATCGCCTGCTCAGCCTGCTTTACAAGG
TGATGCGCAAACATCGCATCGCCGTGGGTTTTACCGCCCCAGGCGCGTCCGCCGTACACGCGCAACTGCGGGCGTTGACC
GGCTTGCTGCCCAAGGCCTTGCAGGAACGCCAGGCCGCCCCCGACTCGGCGGTACTGGCCTGCACCGCGCTGTACGCCGA
TGGCCGGCGCTCCCTGGATGGGTTCGCGGCGATTGTCCGTGAACAGTTCGGGCTGCCCGTGGAGCTGACCGCCTACGAAG
GTGGCTGGCGTGAAATCCCGCCAGCCAGCCGCAGCCGCTTGCAACCGGGCGGGCGCAACCTGTGCCTGGGCCGCAACGCG
GTGACCGGCACCCACGTCTGGGACGAACATGCCGGCGTGCGCCTGACCCTCGGCCCGCTGACCACGGGCCAGGCCAGCGC
ACTGCTGCCCAACGGCGAAGCCCATGCGCTGCTCGCCAGTCTCTACGCCCTGTACTTCGGCCCCGACCTGGATTGCACCC
TGGTGTTGCTGATCCGTGGCGCCGGCCCACTGCAACTGGACCGCCAGGCAGCGCCACGGCTGAACTGGAACGGCGGCCTG
CAACGCCAGCCGACCCTCGCCGTGCAACGGATCGAAACCCGCCTTCGTCAGCCGGAGATAGCCTGA