Detailed information of component protein


Summary

Component ID T6CP004474
Component protein type TssK
T6SS ID (Type) T6SS00431 insolico (Type i4a)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (444 a.a.); Nucleotide sequence (1332 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS17615
Coordinate (Strand) 4098571..4099902 (-)
NCBI ID WP_003202794.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.7e-36 20..386
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 444 a.a.    

>T6CP004474 NC_015379:c4099902-4098571 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssK]
MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALAAYFAGACNPWFWGVSQLEVDPSALSAGQVRLLQLQGTLPDGLPVNLQA
GVGPTLELDIGEAIDKTDDATVTVYLAVSPLWRAGQLVPLKGRLQSVVGEALPDLTSGSFPESITVWRPNPRLCTQLSKA
DSICLPLLRIRKEGGGFWRVPYTPPTPILLPESALGRRVAGVCARAREKCMFLAGRLRQAQAAGNQDDAVEIRRQLTALW
ARLPEVEGALNTQVATPQALYGLLLGLAGSWSALDPLAGVPAFAPLDFLELQRGYEPLLDWLETTLELVRAGYRSLAFER
NEQVFSIQLPDDQPDQRLVIGLRMPNGASEQAAGEWLRGAIIASARHIPLLSRQRMSGLPHQAMSRNEQVAYSVGDDTRL
FVVAASGQWFDAQLPLHIVAPASAQASSPWQVVLFVAQASESA*

  Nucleotide sequence: 1332 bp    

>T6CP004474 NC_015379:c4099902-4098571 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssK]
ATGAGTCTGTTACCTGACGCGGTGTGCTGGCATGAGGGGATGCAATTGCTGCCCCAGCATTTTCAATTGCAAGGGCTGCG
CGCCGAGGCGCTGGCCGCGTATTTTGCCGGGGCCTGCAATCCTTGGTTCTGGGGTGTCAGCCAGTTGGAAGTCGATCCTT
CGGCCCTCAGCGCCGGCCAGGTGCGGCTGCTGCAACTGCAAGGCACCTTGCCGGACGGCTTGCCGGTCAACCTGCAGGCC
GGTGTCGGGCCGACCCTGGAGCTGGACATCGGCGAGGCGATCGACAAGACCGACGACGCCACTGTGACTGTGTACCTGGC
CGTCAGCCCACTGTGGCGCGCCGGGCAATTGGTGCCGCTCAAGGGGCGCCTGCAATCGGTGGTCGGCGAGGCGTTGCCGG
ACCTCACCAGCGGTTCATTTCCCGAGTCGATCACCGTCTGGCGACCCAACCCGAGGTTGTGTACGCAACTGAGCAAGGCC
GATTCGATCTGCCTGCCGCTGTTGCGCATCCGCAAGGAGGGCGGTGGCTTCTGGCGCGTGCCCTACACCCCGCCGACACC
GATCCTGTTGCCGGAGTCGGCTCTCGGTCGACGGGTCGCCGGAGTGTGCGCCCGGGCCCGGGAGAAGTGCATGTTTCTCG
CCGGTCGCTTGCGCCAGGCCCAGGCGGCCGGCAACCAGGACGATGCCGTGGAGATCCGCCGGCAATTGACCGCCTTGTGG
GCGCGCTTGCCGGAAGTCGAGGGCGCGCTGAACACCCAGGTGGCGACGCCCCAGGCGCTCTACGGTTTGCTGCTGGGGTT
GGCCGGGAGCTGGTCGGCCCTCGATCCACTGGCGGGCGTCCCGGCCTTCGCACCGCTGGATTTTCTCGAATTGCAGCGCG
GCTACGAGCCGTTGCTCGACTGGCTGGAAACCACCCTGGAACTGGTTCGTGCCGGCTATCGCAGCCTGGCCTTCGAACGC
AATGAGCAGGTCTTCTCGATCCAGTTGCCTGACGACCAACCGGACCAACGCCTGGTGATCGGCCTGCGCATGCCCAACGG
CGCCAGCGAGCAGGCGGCGGGCGAGTGGTTGCGCGGGGCGATCATCGCGTCGGCGCGGCATATCCCGCTGCTGAGCCGAC
AGCGCATGAGCGGTCTGCCTCACCAGGCCATGAGCCGCAACGAACAGGTGGCCTACAGCGTGGGCGACGACACCCGTTTG
TTTGTGGTGGCGGCCAGCGGGCAATGGTTCGACGCGCAATTGCCGCTGCACATCGTGGCGCCGGCCTCGGCCCAGGCCAG
TAGCCCGTGGCAAGTGGTGTTGTTCGTGGCGCAAGCCAGTGAAAGTGCCTGA