Detailed information of component protein


Summary

Component ID T6CP008918
Component protein type TssL
T6SS ID (Type) T6SS00431 insolico (Type i4a)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (254 a.a.); Nucleotide sequence (762 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS17610
Coordinate (Strand) 4097791..4098552 (-)
NCBI ID WP_003202792.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.6e-29 69..224
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 254 a.a.    

>T6CP008918 NC_015379:c4098552-4097791 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssL]
MPDGSGGAVRSLHEAPLSSAFRQAWLKWSQEWQDLPKDSDPAALVNRVVEFSGRSAQRLWRVAFATVGDAATEQVKSLVY
AFVALVDETLLFSPWPGQLAWQQHPLESRMYASRQAGERLPAAIKKLLDEQMPGTRDLANVYLQCLILGFQGRLRGEPGQ
VQHEKWRLALFTFAWQHEPDYVDVSQRLALSSATPPVRMPVQQSLPDGFRLGLAILAMVLLLTGLGQVFWRDIRLELEPV
LQLNESVVQEQDS*

  Nucleotide sequence: 762 bp    

>T6CP008918 NC_015379:c4098552-4097791 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssL]
ATGCCTGATGGAAGTGGCGGGGCGGTTCGGAGTCTGCATGAGGCGCCGCTGAGCAGCGCTTTTCGCCAGGCCTGGCTGAA
GTGGTCCCAGGAATGGCAAGACTTGCCCAAGGACAGCGACCCTGCGGCATTGGTCAATCGGGTGGTGGAGTTTTCCGGGC
GCAGCGCCCAGCGTCTGTGGCGGGTGGCCTTCGCCACCGTCGGCGATGCCGCTACCGAGCAGGTCAAGTCGCTGGTCTAT
GCCTTCGTGGCGCTGGTGGACGAAACCTTGCTGTTCAGCCCCTGGCCCGGACAACTGGCCTGGCAGCAGCACCCCCTCGA
ATCACGCATGTATGCCAGTCGCCAGGCCGGCGAGCGCTTGCCGGCGGCGATCAAGAAACTGCTGGACGAGCAGATGCCCG
GCACCCGGGACCTGGCGAATGTCTACCTGCAATGCCTGATCCTCGGGTTCCAGGGCCGGTTGCGCGGCGAGCCTGGCCAG
GTTCAGCATGAGAAATGGCGCCTGGCGTTGTTCACGTTTGCCTGGCAGCACGAACCCGATTATGTCGATGTCAGCCAGCG
CCTGGCGCTGTCTTCGGCGACGCCGCCAGTGCGCATGCCGGTGCAGCAATCACTGCCGGACGGCTTTCGCCTGGGGCTGG
CGATCCTGGCGATGGTGTTGTTGTTGACCGGGCTGGGGCAGGTGTTCTGGCGTGACATTCGTTTGGAGCTCGAACCGGTG
CTGCAACTGAACGAGTCGGTGGTTCAGGAGCAGGACTCATGA