Detailed information of component protein


Summary

Component ID T6CP004481
Component protein type TssI
T6SS ID (Type) T6SS00431 insolico (Type i4a)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (670 a.a.); Nucleotide sequence (2010 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS17665
Coordinate (Strand) 4110075..4112084 (+)
NCBI ID WP_013693580.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4e-78 30..323
Phage_base_V PF04717.14 2.2e-16 368..436
Gp5_C PF06715.14 8.3e-06 561..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 670 a.a.    

>T6CP004481 NC_015379:4110075-4112084 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssI]
MPRTTDSNTTLSLTATSLSALYPESLSGEESLNALGSHILNGINDGASLTLTTAVASHVTTTLHKDALLRPLDLLVAEIR
QLPADATAERYQLLLRPWLWWLSLASNNRVFQNLATSDIVTTIFKAHGFTDFQLKLTGSYTPREYCVQYGETDLAFVSRL
LEEDGIFWFFTHEEGTHTLVLADSNDAFAPIPNGPTVNYLGQIIGERELHGIRSGQVCLQAVAGVYQATDYEFTTPTTSL
YSQAEAVAGPSSMYEHPGGYTAKAQGDALTKQRVDGLRSQEKRFVGESDCRWLVPGYWFTLAGHEDTTLNIDWVVTSVSH
EASHDSYRNRFEAIPKATAYRPPRVTAKPRMHTQTALVVGKAGEEILTDEYGRIKLQFPWDRTGKNDETSSCWVRVVLPW
SGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPANQTQSGIKTNSSKGGGGFNELRFEDKKDAEEV
FLQAQKDFNINVLNDTTATVGHDETLTVQNARTRTVKDGDETVTLEKGKRSVTIQTGSDSLDVKDTRTVTVGSDQTHSTG
GNYEHKVTGNYSLTVDGNLTIKVSGTLTLQSGGSFAIKSGADLAAQASTSISQKAGTALSNQAGTSLENKAGTTLTNDAG
ISLVNKAAAEQTVDGGGMLTIKGGLVKVN*

  Nucleotide sequence: 2010 bp    

>T6CP004481 NC_015379:4110075-4112084 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssI]
ATGCCCCGCACCACTGACAGCAACACCACCCTCTCCCTGACCGCCACTTCCCTGTCGGCGCTGTACCCCGAATCGCTATC
GGGCGAAGAAAGCCTCAACGCATTGGGCTCGCACATCCTCAACGGTATCAACGACGGCGCCTCGTTAACCCTCACCACCG
CCGTTGCCAGTCACGTCACCACGACCCTGCACAAGGACGCGCTGCTGCGCCCGTTGGACTTGCTGGTCGCGGAAATCCGC
CAGCTCCCCGCCGACGCCACCGCCGAGCGCTATCAACTCCTGCTCCGGCCCTGGCTCTGGTGGCTGAGCCTGGCCAGCAA
CAACCGCGTATTCCAGAACCTCGCCACCTCGGACATCGTCACCACGATTTTCAAGGCCCATGGTTTCACCGACTTCCAGC
TCAAACTCACCGGCAGCTACACCCCGCGCGAATACTGCGTGCAATATGGCGAGACCGACCTGGCCTTCGTCTCGCGCCTG
CTGGAAGAAGACGGGATCTTCTGGTTCTTCACCCATGAGGAAGGCACCCACACGCTGGTCCTGGCCGACAGCAACGACGC
TTTCGCACCGATTCCCAACGGGCCGACGGTGAACTACCTCGGGCAGATAATCGGCGAGCGGGAACTGCATGGCATCCGCT
CCGGGCAAGTGTGCCTGCAAGCGGTGGCCGGGGTTTACCAGGCAACCGACTATGAGTTCACCACGCCGACGACATCGCTC
TACAGCCAGGCCGAAGCCGTGGCCGGGCCAAGCTCGATGTACGAACATCCCGGCGGCTACACCGCCAAGGCCCAGGGCGA
TGCGTTGACCAAGCAGCGGGTGGACGGCCTGCGCAGCCAGGAGAAACGTTTTGTCGGCGAAAGCGATTGCCGCTGGCTGG
TGCCAGGGTATTGGTTCACCCTCGCCGGCCACGAAGACACGACGCTGAATATCGATTGGGTCGTGACCTCGGTCAGCCAC
GAAGCCAGCCACGACAGCTATCGCAACCGCTTCGAAGCGATCCCCAAGGCCACGGCCTATCGACCGCCCCGCGTCACGGC
AAAACCGCGCATGCACACCCAGACGGCGCTGGTGGTGGGCAAGGCCGGCGAAGAAATCTTGACCGATGAATATGGCCGGA
TCAAATTGCAGTTCCCCTGGGACCGCACCGGCAAGAACGACGAGACCTCATCCTGTTGGGTCCGCGTGGTCTTGCCCTGG
AGCGGCAAAGGCTTTGGCATGCAGTTCGTACCGCGCATCGGCCAGGAAGTCATCGTGACCTTCATCGACGGCGACCCGGA
CCGTCCCCTGGTCACCGGCTGCGTCTACAACGGCGACAACGCCCTGCCCTACGCACTGCCGGCGAACCAGACCCAGTCCG
GGATCAAGACCAATTCGTCCAAGGGCGGCGGCGGTTTCAACGAGTTGCGTTTCGAAGACAAGAAGGACGCCGAAGAGGTG
TTTCTCCAGGCCCAGAAAGACTTCAACATCAACGTGCTCAACGACACCACCGCCACCGTCGGCCACGACGAAACCCTCAC
GGTGCAGAACGCCCGCACCCGCACGGTGAAGGATGGCGACGAAACCGTGACCCTGGAGAAAGGCAAGCGCAGCGTGACCA
TCCAGACCGGCAGCGACAGCCTTGATGTGAAGGACACCCGCACCGTCACCGTGGGCTCGGACCAGACCCACAGCACCGGC
GGCAACTACGAGCACAAGGTCACCGGCAATTACAGCCTGACGGTGGACGGCAACCTGACCATCAAGGTCAGCGGCACCCT
GACCCTGCAAAGCGGCGGCAGCTTCGCGATCAAGAGCGGCGCCGACCTGGCCGCCCAGGCCAGCACGTCCATCAGCCAGA
AAGCCGGCACAGCCCTGAGCAACCAGGCCGGTACCTCGCTGGAAAACAAGGCCGGCACCACCCTGACCAACGACGCCGGC
ATCAGCTTGGTGAACAAGGCCGCGGCCGAACAGACCGTGGACGGCGGCGGCATGCTGACCATCAAGGGCGGCCTGGTGAA
GGTCAACTGA