Detailed information of component protein


Summary

Component ID T6CP004476
Component protein type TssC
T6SS ID (Type) T6SS00431 insolico (Type i4a)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS17630
Coordinate (Strand) 4101232..4102713 (+)
NCBI ID WP_003202801.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 7.4e-138 67..367
VipB_2 PF18945.2 1.1e-45 376..487
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 494 a.a.    

>T6CP004476 NC_015379:4101232-4102713 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssC]
MPASSSAQTSESTTQTLSLLDKIIAEGRMAHDDSQQDYARDMLAEFATQVLDEGMAIDKDTVAMINDRISQIDQLISAQL
NEVLHHPDLQKLEASWRGLHLLVQNTETSTRLKLRLLNVTQKELQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLV
GDYTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRLFDMTSFTELAIPRDLSKIFESQELIKWRAFRESEDSRYVSLVL
PHFLLRLPYGPDTLPVEGINYVEDVNGTDHSKYLWGNAAWTLAQRITEAFAKYGWCAAIRGAEGGGAVEGLPAHTFRTSS
GDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAVFFGGQTTNKAKAYNTNEANANARISAMLPYVLAASRFAHYL
KVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVAGKPGAYKATVFLRPHFQLEELTAS
IRLVATLPPPVAA*

  Nucleotide sequence: 1482 bp    

>T6CP004476 NC_015379:4101232-4102713 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssC]
ATGCCTGCTTCATCCAGCGCTCAAACCAGCGAGAGCACGACCCAGACCCTGTCCCTGCTGGACAAGATCATCGCCGAAGG
CCGCATGGCCCACGACGACAGCCAGCAAGATTACGCCCGCGACATGCTGGCCGAATTCGCCACCCAGGTCCTCGACGAAG
GCATGGCCATCGACAAGGACACCGTGGCGATGATCAACGACCGCATCAGCCAGATCGACCAGTTGATCAGCGCCCAGCTA
AACGAAGTGCTGCACCACCCCGACCTGCAGAAACTCGAAGCCTCCTGGCGCGGCCTGCACCTGCTGGTGCAGAACACCGA
GACCAGCACCCGGCTCAAATTGCGCCTGCTCAACGTCACCCAGAAAGAACTGCAGAACGATCTGGAAAAAGCCGTCGAAT
TCGACCAGAGCGCGCTGTTCAAGAAAATCTACGAGGAAGAATACGGCACCTTCGGCGGGCATCCGTTCAGTCTGCTGGTG
GGCGACTACACCTTTGGCCGGCATCCCCAGGACATCGGCCTGCTGGAAAAACTCTCGAACGTCGCCGCCGCCGCACATGC
CCCGTTCATTGCCGCGGCCAGCCCGCGGTTGTTCGACATGACCAGCTTCACCGAACTGGCGATCCCCAGGGACCTGTCGA
AGATTTTCGAAAGCCAGGAGCTGATCAAGTGGCGCGCCTTCCGTGAAAGCGAAGACTCGCGCTACGTATCCCTGGTGCTG
CCGCACTTCCTGCTGCGCCTGCCATACGGCCCGGACACGCTGCCGGTGGAAGGCATCAACTACGTCGAAGACGTCAACGG
CACCGACCACAGCAAATACCTGTGGGGCAACGCCGCCTGGACCCTGGCGCAACGCATCACCGAAGCCTTCGCCAAATATG
GCTGGTGCGCAGCCATTCGCGGGGCCGAGGGCGGTGGCGCGGTCGAAGGCCTGCCGGCCCATACGTTCCGCACCAGTTCC
GGGGATCTGTCGCTCAAATGCCCGACCGAAGTGGCAATCACCGACCGCCGTGAAAAGGAACTCAACGACCTGGGCTTCAT
CTCCCTGTGCCACAAGAAAAACAGCGACGTGGCGGTGTTCTTCGGCGGCCAGACCACCAACAAGGCCAAGGCCTACAACA
CCAACGAGGCCAACGCCAACGCGCGGATCTCGGCGATGTTGCCATACGTGCTCGCGGCCTCGCGCTTCGCCCATTACCTG
AAGGTGATCATGCGTGACAAGGTCGGCAGTTTCATGACCCGCGACAACGTGCAGACCTACCTCAACAACTGGATCGCCGA
CTACGTGCTGATCAACGACAACGCGCCGCAAGAGATCAAGGCGCAGTACCCGTTGCGCGAAGCACGGGTGGACGTGACGG
AAGTGGCCGGCAAGCCAGGGGCCTACAAGGCCACGGTGTTCCTGCGGCCGCACTTCCAGCTGGAGGAGCTGACCGCCTCG
ATCCGCCTGGTGGCGACCCTGCCGCCACCGGTAGCTGCCTGA