Detailed information of component protein


Summary

Component ID T6CP004478
Component protein type TssF
T6SS ID (Type) T6SS00431 insolico (Type i4a)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (597 a.a.); Nucleotide sequence (1791 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS17645
Coordinate (Strand) 4103844..4105634 (+)
NCBI ID WP_003202807.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.8e-178 6..592
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 597 a.a.    

>T6CP004478 NC_015379:4103844-4105634 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssF]
MSDSIDPQLLDYYQRELTWLRHAGSLFAERYPKVARRLELSPGECPDPHVERLLEGFALLAARLQRRLDDDYAEFSDALL
EQLYPLAMRPLPSCAIVQFEPDPSKGNLNEGYPLPRDTPLFVTTDTGQSIHFRTTAAVHLWPVEISEALLLGSDEAQALT
GVVRARSALRLELRCLGESQWSTLGIDSLRVHLAASPIINAGLYDLLGAHAIEVLAGAPGSVPESLTGLPQIVGFASDQV
LLPDEDGVHPGMRLLAEYFAFPDKFGFFDLPLAGATSDGPSLYLYIVFDRPPTSRLPLQASDIALGCTPVINLFPRTSEP
LRPDGTRSEYRLVADSHRENSVEIHSIRGMRAMSSQGVRKVPAYYGSQHGSDQTCYWHARRVSGMSPNRLGTDLMVSLVD
TQFDPLADTRDYSLTAELLCTNRHLAQSLPAGTPLGFERPGPVAWARLRNPPSPQSLPRLDGESRWRLVSQLTLNHLSLV
EGPQALDALREILQLHNLRDEASAHRQIEGVSGLGCDRVIAHVGEDAWRGWRNGLEVRLQLDPQYFVGSSAVLFSGVLAQ
FFSLYATANRFVRTVLVQSDKEVKTWQPQAGKPLVL*

  Nucleotide sequence: 1791 bp    

>T6CP004478 NC_015379:4103844-4105634 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssF]
ATGAGCGACTCGATTGACCCGCAACTGTTGGACTATTACCAACGCGAACTGACCTGGTTGCGGCATGCCGGGAGTCTGTT
CGCCGAGCGCTACCCCAAGGTCGCCCGGCGCCTGGAGTTGTCCCCCGGAGAGTGCCCCGACCCGCATGTCGAGCGCCTGC
TCGAAGGTTTCGCGCTGTTGGCCGCCCGCTTGCAACGCCGGCTGGACGACGACTACGCCGAATTCAGCGATGCCCTGCTC
GAACAGCTTTACCCGTTGGCCATGCGCCCTTTGCCGTCGTGCGCCATCGTGCAGTTCGAACCCGACCCCAGCAAAGGCAA
CTTGAACGAGGGCTACCCGCTGCCCCGCGACACACCGTTGTTCGTCACCACGGACACAGGCCAGAGCATTCATTTTCGGA
CCACCGCCGCCGTGCATTTGTGGCCGGTGGAAATCAGCGAGGCATTGCTGCTGGGCAGCGACGAAGCCCAGGCGCTGACC
GGAGTGGTCCGGGCCCGCTCGGCCTTGCGCCTGGAGCTGCGGTGCCTGGGCGAAAGCCAGTGGTCGACGCTGGGAATCGA
CTCGCTGCGGGTACACCTGGCGGCGTCACCGATCATCAACGCCGGGCTGTATGACCTGCTGGGCGCGCACGCCATCGAGG
TCCTGGCCGGTGCGCCGGGCAGCGTGCCGGAGTCGCTGACAGGCTTGCCACAGATCGTCGGCTTCGCCAGTGACCAGGTC
TTGCTGCCGGATGAAGACGGTGTGCATCCGGGCATGCGTCTGCTGGCCGAGTACTTTGCCTTCCCGGATAAATTCGGCTT
CTTCGATCTGCCACTGGCCGGCGCCACCAGCGACGGCCCGTCCTTGTACCTGTACATCGTTTTCGACCGCCCTCCCACCA
GCCGCCTGCCGCTCCAGGCCAGCGACATCGCCCTGGGCTGCACGCCGGTGATCAACCTGTTCCCCAGGACTTCCGAGCCG
CTGCGCCCGGATGGCACTCGCAGCGAGTACCGGTTGGTGGCCGACAGTCATCGGGAAAACAGCGTCGAGATCCACAGCAT
CCGTGGCATGCGCGCCATGTCCAGCCAGGGCGTGCGCAAAGTGCCGGCCTATTACGGCAGCCAGCATGGCAGCGACCAAA
CCTGTTATTGGCATGCGCGTCGGGTCAGTGGCATGAGCCCGAATCGATTGGGCACCGACTTGATGGTCAGCCTGGTGGAC
ACCCAGTTCGACCCGCTGGCCGATACCCGCGACTACAGCCTCACCGCCGAACTGCTGTGCACCAACCGCCATCTGGCCCA
GAGCCTGCCGGCCGGCACCCCGTTGGGTTTCGAGCGCCCGGGGCCGGTGGCCTGGGCACGCCTGCGCAACCCACCCAGCC
CGCAAAGCCTGCCGCGCCTGGACGGCGAATCGCGCTGGCGGCTGGTGTCGCAATTGACCCTCAACCATTTGTCGCTGGTC
GAAGGCCCCCAGGCATTGGACGCCCTGCGCGAGATTCTCCAACTGCACAACCTGCGGGACGAGGCCAGCGCCCATCGCCA
GATCGAAGGGGTATCGGGGCTGGGCTGCGACCGGGTCATCGCCCATGTCGGCGAAGACGCCTGGCGCGGCTGGCGCAACG
GGCTGGAGGTGCGCCTGCAACTGGACCCGCAATACTTCGTCGGTAGCAGCGCCGTGCTGTTCTCCGGGGTGCTGGCGCAA
TTCTTTTCCCTTTACGCCACCGCCAATCGCTTCGTGCGCACCGTGCTGGTCCAGTCCGACAAGGAGGTGAAGACATGGCA
ACCCCAAGCCGGCAAACCCCTGGTGCTCTGA