Detailed information of component protein


Summary

Component ID T6CP004472
Component protein type TssA
T6SS ID (Type) T6SS00431 insolico (Type i4a)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (361 a.a.); Nucleotide sequence (1083 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS17600
Coordinate (Strand) 4092891..4093973 (-)
NCBI ID WP_013693575.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.4e-34 16..138
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 361 a.a.    

>T6CP004472 NC_015379:c4093973-4092891 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssA]
VSLPISPLPELVSQLLEPISAESPCGPDLRYEPEYDQLRELRREDDTSLPTGVWQSSIKRALWPDLERLATTLLLERSKD
LMISAWLGEAWLHMAGLEGLPGSLALVAGLCERYPEQLHPQAEDGDQSWRVIPLEWLARRYSEVLLTRVPLFDGREQAFA
AFSLDDWQRLQRQQVLVNDSKNAKASAEAARNDQKKLGELIRNTPLSFWLHRQGSLMLSLQHLQRLEAWSDAYLGNLAPG
YKSLQDVMQALLTLVEEFIAMHPQQPTVAPVQTSPASTTSTSQPQAAPAQVFQEPANREEAYRQLMVIAGYLARTEPHSP
VPYLIRRGVEWGNKPLSELLGELISADAESRRLWTLLGVL*

  Nucleotide sequence: 1083 bp    

>T6CP004472 NC_015379:c4093973-4092891 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssA]
GTGAGCTTGCCGATATCGCCTTTGCCTGAGCTGGTCAGCCAGTTGCTCGAGCCGATCAGCGCCGAATCGCCCTGTGGCCC
GGACCTGCGCTACGAACCGGAATACGACCAGTTGCGCGAATTGCGCCGGGAAGACGACACCAGCCTGCCCACCGGCGTGT
GGCAGTCTTCGATCAAGCGCGCCCTGTGGCCAGACCTGGAACGGCTTGCGACCACGTTGCTGCTTGAGCGCAGCAAGGAC
CTGATGATCAGCGCCTGGCTGGGGGAGGCCTGGCTGCATATGGCCGGGCTGGAGGGGTTGCCGGGTAGCCTGGCGCTGGT
GGCGGGGCTGTGTGAGCGCTATCCGGAGCAGTTGCACCCCCAGGCCGAGGACGGCGACCAGTCGTGGCGGGTGATCCCGC
TGGAGTGGCTGGCCCGGCGCTACAGCGAAGTGCTGCTGACGCGGGTGCCGTTGTTCGACGGCCGGGAGCAGGCCTTCGCC
GCTTTCTCCCTGGACGACTGGCAACGCTTGCAGCGCCAGCAAGTGTTGGTCAACGACAGCAAGAACGCCAAGGCCTCGGC
CGAAGCGGCGCGCAACGATCAAAAGAAACTCGGCGAACTGATTCGCAACACACCCTTGTCGTTCTGGTTGCACCGCCAAG
GCAGCCTGATGTTGAGCCTGCAACACCTGCAACGGCTCGAAGCCTGGAGCGACGCTTACCTGGGCAACCTGGCCCCGGGC
TACAAATCCCTGCAGGACGTGATGCAGGCCTTGCTGACACTGGTAGAGGAGTTCATCGCGATGCACCCACAGCAACCCAC
CGTCGCGCCGGTGCAAACGTCCCCGGCATCCACGACGTCGACGTCCCAGCCGCAGGCGGCTCCAGCCCAGGTCTTCCAGG
AACCGGCCAATCGTGAAGAGGCCTACCGACAGCTAATGGTCATCGCCGGTTACCTGGCCCGTACCGAACCCCACAGCCCG
GTGCCCTACCTGATCCGACGCGGCGTGGAGTGGGGCAACAAGCCGTTGAGTGAGTTGCTGGGGGAACTGATCAGTGCCGA
TGCCGAGTCCCGGCGCTTGTGGACGTTATTGGGCGTTCTCTAA