Detailed information of component protein


Summary

Component ID T6CP004475
Component protein type TssB
T6SS ID (Type) T6SS00431 insolico (Type i4a)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (187 a.a.); Nucleotide sequence (561 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS17625
Coordinate (Strand) 4100641..4101201 (+)
NCBI ID WP_003202799.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2e-55 10..160
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 187 a.a.    

>T6CP004475 NC_015379:4100641-4101201 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssB]
MAESTQHKLDRVRPPRVQITYDVEIGNAIEKKELPLVVGILADLSGKPLDPLPKLNERRFTEIDRDNFNEVLASISPRAT
LQVNNTLSGDDSKLNIELNFRHIDDFDPVKVVEQVTPLRRLFEARQRLRDLLTKLDGNDDLDKLLRDVIANTEGLQEIKS
ARPQDVPPELPAVAANDDPAPAEPQA*

  Nucleotide sequence: 561 bp    

>T6CP004475 NC_015379:4100641-4101201 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssB]
ATGGCAGAAAGTACCCAGCACAAGCTCGACAGAGTCCGTCCTCCCCGCGTCCAGATCACCTATGACGTGGAGATCGGCAA
CGCCATCGAGAAAAAAGAATTGCCACTGGTGGTCGGCATTCTGGCCGACCTCTCAGGCAAGCCACTGGACCCGCTGCCCA
AGCTCAATGAGCGGCGCTTTACCGAAATCGATCGGGATAATTTCAACGAGGTACTCGCCTCCATCTCCCCCCGCGCCACG
CTCCAGGTGAACAACACCCTCAGCGGCGACGACAGCAAGCTCAACATCGAACTCAACTTCCGTCACATCGACGACTTCGA
CCCGGTCAAGGTCGTGGAGCAGGTCACGCCGCTGCGTCGGTTGTTCGAAGCGCGCCAACGCCTGCGGGACCTGTTGACCA
AACTCGATGGCAACGACGACCTGGACAAGCTGCTGCGCGACGTGATCGCCAACACCGAGGGCCTGCAGGAAATCAAGTCG
GCGCGACCCCAGGACGTACCGCCGGAGCTGCCCGCCGTGGCCGCCAACGATGACCCTGCCCCGGCCGAACCACAGGCCTG
A