Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00224  |
| T6SS type | Type i2 |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon (RefSeq) | chromosome (NC_009708) |
| Location | 2808154..2844912 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPSIP31758_RS13705 (moeB) | 2803334..2804104 | + | 771 | WP_002211948.1 | molybdopterin-synthase adenylyltransferase MoeB | ||
| YPSIP31758_RS13710 | 2804176..2804823 | - | 648 | WP_012105338.1 | hypothetical protein | ||
| YPSIP31758_RS13715 | 2805041..2806636 | - | 1596 | WP_012105339.1 | ABC-F family ATPase | ||
| YPSIP31758_RS13720 | 2807319..2807942 | + | 624 | WP_012105340.1 | hypothetical protein | ||
| T6CP009360 | TssA | YPSIP31758_RS13725 | 2808154..2809521 | - | 1368 | WP_012105341.1 | type VI secretion system ImpA and VasL domain-containing protein |
| T6CP002232 | TssE | YPSIP31758_RS13730 (tssE) | 2809545..2809997 | - | 453 | WP_002211943.1 | type VI secretion system baseplate subunit TssE |
| T6CP002233 | TssJ | YPSIP31758_RS13735 (tssJ) | 2809997..2810578 | - | 582 | WP_012105342.1 | type VI secretion system lipoprotein TssJ |
| T6CP002234 | TssG | YPSIP31758_RS13740 (tssG) | 2810553..2811638 | - | 1086 | WP_012105343.1 | type VI secretion system baseplate subunit TssG |
| T6CP002235 | TssF | YPSIP31758_RS13745 (tssF) | 2811602..2813365 | - | 1764 | WP_012105344.1 | type VI secretion system baseplate subunit TssF |
| YPSIP31758_RS13750 | 2813457..2813915 | - | 459 | WP_012105345.1 | DUF943 family protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||