Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00224  |
| T6SS type | Type i2 |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon (RefSeq) | chromosome (NC_009708) |
| Location | 2808154..2844912 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPSIP31758_RS13705 (moeB) | 2803334..2804104 | + | 771 | WP_002211948.1 | molybdopterin-synthase adenylyltransferase MoeB | ||
| YPSIP31758_RS13710 | 2804176..2804823 | - | 648 | WP_012105338.1 | hypothetical protein | ||
| YPSIP31758_RS13715 | 2805041..2806636 | - | 1596 | WP_012105339.1 | ABC-F family ATPase | ||
| YPSIP31758_RS13720 | 2807319..2807942 | + | 624 | WP_012105340.1 | hypothetical protein | ||
| T6CP009360 | TssA | YPSIP31758_RS13725 | 2808154..2809521 | - | 1368 | WP_012105341.1 | type VI secretion system ImpA and VasL domain-containing protein |
| T6CP002232 | TssE | YPSIP31758_RS13730 (tssE) | 2809545..2809997 | - | 453 | WP_002211943.1 | type VI secretion system baseplate subunit TssE |
| T6CP002233 | TssJ | YPSIP31758_RS13735 (tssJ) | 2809997..2810578 | - | 582 | WP_012105342.1 | type VI secretion system lipoprotein TssJ |
| T6CP002234 | TssG | YPSIP31758_RS13740 (tssG) | 2810553..2811638 | - | 1086 | WP_012105343.1 | type VI secretion system baseplate subunit TssG |
| T6CP002235 | TssF | YPSIP31758_RS13745 (tssF) | 2811602..2813365 | - | 1764 | WP_012105344.1 | type VI secretion system baseplate subunit TssF |
| YPSIP31758_RS13750 | 2813457..2813915 | - | 459 | WP_012105345.1 | DUF943 family protein | ||
| T6CP011610 | PAAR | YPSIP31758_RS13755 | 2813918..2815033 | - | 1116 | WP_012105346.1 | PAAR domain-containing protein |
| T6CP009361 | TssA | YPSIP31758_RS13760 (tssA) | 2815051..2816652 | - | 1602 | WP_012105347.1 | type VI secretion system protein TssA |
| YPSIP31758_RS13765 | 2816697..2817482 | - | 786 | WP_049756384.1 | hypothetical protein | ||
| YPSIP31758_RS13770 | 2817531..2820572 | - | 3042 | WP_012105349.1 | hypothetical protein | ||
| T6CP002236 | TssM | YPSIP31758_RS13775 | 2820654..2824076 | - | 3423 | WP_012105350.1 | type VI secretion system membrane subunit |
| YPSIP31758_RS13780 | 2824073..2825305 | - | 1233 | WP_012105351.1 | hypothetical protein | ||
| YPSIP31758_RS23360 | 2826135..2826930 | + | 796 | pseudogene | transposase | ||
| YPSIP31758_RS13790 | 2827470..2828117 | - | 648 | WP_033851509.1 | hypothetical protein | ||
| YPSIP31758_RS13795 | 2828114..2829738 | - | 1625 | pseudogene | M23 family metallopeptidase | ||
| YPSIP31758_RS13800 | 2829754..2830014 | - | 261 | WP_012105355.1 | DUF2345 domain-containing protein | ||
| YPSIP31758_RS13805 | 2830168..2830941 | - | 774 | WP_002211930.1 | hypothetical protein | ||
| YPSIP31758_RS13810 | 2830938..2833238 | - | 2301 | WP_012105356.1 | M23 family metallopeptidase | ||
| T6CP002237 | TssI | YPSIP31758_RS13815 | 2833254..2835602 | - | 2349 | WP_012105357.1 | type VI secretion system tip protein VgrG |
| T6CP002238 | TssH | YPSIP31758_RS13820 (tssH) | 2835605..2838247 | - | 2643 | WP_012105358.1 | type VI secretion system ATPase TssH |
| T6CP009362 | TssD | YPSIP31758_RS13825 | 2838541..2839032 | - | 492 | WP_002210014.1 | Hcp family type VI secretion system effector |
| T6CP011611 | TagL | YPSIP31758_RS13830 | 2839036..2840772 | - | 1737 | WP_012105359.1 | OmpA family protein |
| T6CP009304 | TssL | YPSIP31758_RS13835 (tssL) | 2840772..2841458 | - | 687 | WP_012105360.1 | type VI secretion system protein TssL, short form |
| T6CP002239 | TssK | YPSIP31758_RS13840 (tssK) | 2841455..2842807 | - | 1353 | WP_002222847.1 | type VI secretion system baseplate subunit TssK |
| T6CP002240 | TssC | YPSIP31758_RS13845 (tssC) | 2842819..2844369 | - | 1551 | WP_012104583.1 | type VI secretion system contractile sheath large subunit |
| T6CP002241 | TssB | YPSIP31758_RS13850 (tssB) | 2844412..2844912 | - | 501 | WP_002211662.1 | type VI secretion system contractile sheath small subunit |
| YPSIP31758_RS13860 | 2845901..2846749 | - | 849 | WP_002213016.1 | ACP S-malonyltransferase | ||
| YPSIP31758_RS13865 | 2846848..2847096 | - | 249 | WP_002213017.1 | acyl carrier protein | ||
| YPSIP31758_RS13870 | 2847134..2847574 | - | 441 | WP_002228570.1 | lipocalin-like domain-containing protein | ||
| YPSIP31758_RS13875 | 2847661..2848449 | - | 789 | WP_012105361.1 | SDR family oxidoreductase | ||
| YPSIP31758_RS13880 | 2848452..2849204 | - | 753 | WP_002213025.1 | enoyl-CoA hydratase/isomerase family protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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