Detailed information of component protein
Summary
| Component ID | T6CP002233 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00224  (Type i2) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (194 a.a.); Nucleotide sequence (582 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS13735 |
| Coordinate (Strand) | 2809997..2810578 (-) |
| NCBI ID | WP_012105342.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 6.7e-31 | 61..184 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-193 | VLTTVWKNKTCTSKHKSWAAWKNKICIPALVLLLSGCGLTQAVTDSTVSATKSLFYKQIKVLHLDFTAREALNTDAHEANSSSEPVMVRVYQLRDDKTFLKTVYQQLASDGEAALKDDLLASRSVVVKPGGAVTLDMPMEKETQFVAVVALFRHPDMAKDHWRLILTLDDLHPDKPRTLELGNNSLTLRAEKK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9715 | pos: 36-37. LSG-CG. | VLTTVWKNKTCTSKHKSWAAWKNKICIPALVLLLSG |
Protein sequence: 194 a.a.
>T6CP002233 NC_009708:c2810578-2809997 [Yersinia pseudotuberculosis IP 31758] [TssJ]
VLTTVWKNKTCTSKHKSWAAWKNKICIPALVLLLSGCGLTQAVTDSTVSATKSLFYKQIKVLHLDFTAREALNTDAHEAN
SSSEPVMVRVYQLRDDKTFLKTVYQQLASDGEAALKDDLLASRSVVVKPGGAVTLDMPMEKETQFVAVVALFRHPDMAKD
HWRLILTLDDLHPDKPRTLELGNNSLTLRAEKK*
VLTTVWKNKTCTSKHKSWAAWKNKICIPALVLLLSGCGLTQAVTDSTVSATKSLFYKQIKVLHLDFTAREALNTDAHEAN
SSSEPVMVRVYQLRDDKTFLKTVYQQLASDGEAALKDDLLASRSVVVKPGGAVTLDMPMEKETQFVAVVALFRHPDMAKD
HWRLILTLDDLHPDKPRTLELGNNSLTLRAEKK*
Nucleotide sequence: 582 bp
>T6CP002233 NC_009708:c2810578-2809997 [Yersinia pseudotuberculosis IP 31758] [TssJ]
GTGTTAACTACCGTTTGGAAAAATAAAACCTGTACTTCGAAACATAAAAGCTGGGCCGCCTGGAAAAATAAAATCTGCAT
CCCCGCACTGGTCTTGTTGCTCAGTGGCTGCGGGCTGACGCAAGCCGTGACCGATAGCACCGTGTCGGCCACAAAATCAC
TGTTTTATAAGCAGATAAAGGTGCTGCATCTGGACTTTACCGCCCGTGAAGCCCTGAATACCGATGCGCACGAGGCGAAC
TCGTCATCGGAGCCGGTAATGGTGCGGGTTTATCAGTTACGTGATGATAAAACCTTCCTCAAAACGGTGTATCAACAACT
GGCAAGCGACGGGGAGGCGGCGCTTAAAGATGACCTGCTGGCCAGCCGCAGTGTGGTGGTGAAACCGGGCGGGGCGGTAA
CACTGGATATGCCGATGGAAAAAGAGACTCAATTTGTGGCGGTGGTGGCGCTGTTCCGCCATCCGGATATGGCCAAAGAC
CACTGGCGTCTGATACTCACGCTGGACGACCTGCATCCCGATAAACCTCGCACCCTTGAGCTGGGCAATAACAGCCTGAC
ATTACGGGCGGAGAAAAAATAA
GTGTTAACTACCGTTTGGAAAAATAAAACCTGTACTTCGAAACATAAAAGCTGGGCCGCCTGGAAAAATAAAATCTGCAT
CCCCGCACTGGTCTTGTTGCTCAGTGGCTGCGGGCTGACGCAAGCCGTGACCGATAGCACCGTGTCGGCCACAAAATCAC
TGTTTTATAAGCAGATAAAGGTGCTGCATCTGGACTTTACCGCCCGTGAAGCCCTGAATACCGATGCGCACGAGGCGAAC
TCGTCATCGGAGCCGGTAATGGTGCGGGTTTATCAGTTACGTGATGATAAAACCTTCCTCAAAACGGTGTATCAACAACT
GGCAAGCGACGGGGAGGCGGCGCTTAAAGATGACCTGCTGGCCAGCCGCAGTGTGGTGGTGAAACCGGGCGGGGCGGTAA
CACTGGATATGCCGATGGAAAAAGAGACTCAATTTGTGGCGGTGGTGGCGCTGTTCCGCCATCCGGATATGGCCAAAGAC
CACTGGCGTCTGATACTCACGCTGGACGACCTGCATCCCGATAAACCTCGCACCCTTGAGCTGGGCAATAACAGCCTGAC
ATTACGGGCGGAGAAAAAATAA