Detailed information of component protein


Summary

Component ID T6CP002236
Component protein type TssM
T6SS ID (Type) T6SS00224 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (1141 a.a.); Nucleotide sequence (3423 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS13775
Coordinate (Strand) 2820654..2824076 (-)
NCBI ID WP_012105350.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 1.6e-62 418..735
IcmF_C PF06744.14 4.7e-22 999..1098
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 VKRIALPIKKPE
Transmembrane helix 13-35 VWFWIVALLFLLAGAVLCWLVWQ
Outside 36-49 HPERVGLIPGTPQR
Transmembrane helix 50-72 DRWLTGLVVGTGILTLCALLSYA
Inside 73-369 GTRLSGRKHFDELRQQAQGDDAPLPEDNAQAGETQQGEPSRLKTRLRRRYGLFWRDKVRLLMVVGEPDEIAALAPQLAEQGWLEGQRTVLIHGGSLQRPADETGLSEWRKLRRGRPLDGIVWAMTAAQSGTPQWMDNGLRTLEKMGAALRYQPPVYLWQVCDSDWPQDSRTEQPVGAVFPAKATPEKVEQQLRALLPQLREQGMQQLSIEPHHDFLLRLAQSLDQGDAARWRQRLTPWFTEYAARIPLRGLMFSLPDTSASAAQVHEKSWTVPASWQGVLDDCRSARGRRVGLPWEQ
Transmembrane helix 370-392 TLCYSLLALIVLWGVGSVVSFAV
Outside 393-1140 NRHQMVSAAQQAQQLAQSHAVSDQQLMALQALRNDIGRLQARVAQGAPWYQRFGLDHNAPLLEVLMPWYGQANNRILRDTTAQSLYQKLSELAELPANSPQRAARAKTGYDQLKAYLMMARPEKADAVFYAQVMQTTEPTRAGVSPGLWQSLAPDLWQFYAQNLPAQPDWKITPDTGLVSQVRQVLLGQMGQRNAESTLYENMLLSVRRNYADMTLMDMTGDTDAQRLFQTSESVPGMFTRKAWDEQIQQAIDKTVASRREEIDWVLSDNRRAISEDISPEALKKRLTERYFTDFAGSWLSFLNSLHWNEAHNLSDVIDQLTLMSDVRQSPLIALMNTLAWQGQTGQQNQALSDSLVKSAKALMNKDQAPAIDQSAGGPVGPLDETFGPLLALMGKGDAQNRLSSDSSLSLQTLLTRVTRVRLKLQQVVNASDPQEMTQVLAQTVFQGKSVDLTDTQEYGSLIAASLGEEWSSFGQTMFVQPLTQAWETVLQPSSASLNDQWKNAVVANWKSAFDGRYPFAASKSDASLPMLAEFIRKDSGRIDSFLTRELGGVLHKEGTRWVPSKVNSQGLTFNPAFLAAINQLSQISDILFTDGSQGLRFELLARPVPNVVETHLAIDGQKLHYFNQMESWQSFRWPGETYKPGTLLTWTGVSSGARLYGDYQGTWGLIRWLEQAKQKKLDEGRYQLTFTTADKQPLQWILRTELGKGPLGLLQLRNFTLPAQIFLIQNAPPAVADMSDDEDMAED


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9947 - -


  Protein sequence: 1141 a.a.    

>T6CP002236 NC_009708:c2824076-2820654 [Yersinia pseudotuberculosis IP 31758] [TssM]
VKRIALPIKKPEVWFWIVALLFLLAGAVLCWLVWQHPERVGLIPGTPQRDRWLTGLVVGTGILTLCALLSYAGTRLSGRK
HFDELRQQAQGDDAPLPEDNAQAGETQQGEPSRLKTRLRRRYGLFWRDKVRLLMVVGEPDEIAALAPQLAEQGWLEGQRT
VLIHGGSLQRPADETGLSEWRKLRRGRPLDGIVWAMTAAQSGTPQWMDNGLRTLEKMGAALRYQPPVYLWQVCDSDWPQD
SRTEQPVGAVFPAKATPEKVEQQLRALLPQLREQGMQQLSIEPHHDFLLRLAQSLDQGDAARWRQRLTPWFTEYAARIPL
RGLMFSLPDTSASAAQVHEKSWTVPASWQGVLDDCRSARGRRVGLPWEQTLCYSLLALIVLWGVGSVVSFAVNRHQMVSA
AQQAQQLAQSHAVSDQQLMALQALRNDIGRLQARVAQGAPWYQRFGLDHNAPLLEVLMPWYGQANNRILRDTTAQSLYQK
LSELAELPANSPQRAARAKTGYDQLKAYLMMARPEKADAVFYAQVMQTTEPTRAGVSPGLWQSLAPDLWQFYAQNLPAQP
DWKITPDTGLVSQVRQVLLGQMGQRNAESTLYENMLLSVRRNYADMTLMDMTGDTDAQRLFQTSESVPGMFTRKAWDEQI
QQAIDKTVASRREEIDWVLSDNRRAISEDISPEALKKRLTERYFTDFAGSWLSFLNSLHWNEAHNLSDVIDQLTLMSDVR
QSPLIALMNTLAWQGQTGQQNQALSDSLVKSAKALMNKDQAPAIDQSAGGPVGPLDETFGPLLALMGKGDAQNRLSSDSS
LSLQTLLTRVTRVRLKLQQVVNASDPQEMTQVLAQTVFQGKSVDLTDTQEYGSLIAASLGEEWSSFGQTMFVQPLTQAWE
TVLQPSSASLNDQWKNAVVANWKSAFDGRYPFAASKSDASLPMLAEFIRKDSGRIDSFLTRELGGVLHKEGTRWVPSKVN
SQGLTFNPAFLAAINQLSQISDILFTDGSQGLRFELLARPVPNVVETHLAIDGQKLHYFNQMESWQSFRWPGETYKPGTL
LTWTGVSSGARLYGDYQGTWGLIRWLEQAKQKKLDEGRYQLTFTTADKQPLQWILRTELGKGPLGLLQLRNFTLPAQIFL
IQNAPPAVADMSDDEDMAED*

  Nucleotide sequence: 3423 bp    

>T6CP002236 NC_009708:c2824076-2820654 [Yersinia pseudotuberculosis IP 31758] [TssM]
GTGAAGCGCATTGCCTTACCGATTAAAAAGCCAGAAGTCTGGTTCTGGATTGTTGCCCTGCTGTTTTTGCTGGCCGGTGC
CGTGTTGTGCTGGCTGGTCTGGCAACACCCCGAACGGGTGGGGTTAATTCCGGGGACACCGCAACGTGACCGTTGGCTGA
CGGGACTGGTGGTGGGAACGGGGATCCTGACCCTGTGCGCATTACTGTCGTATGCGGGGACCCGGTTATCCGGCAGAAAA
CACTTTGATGAGCTACGGCAGCAGGCACAGGGCGATGATGCGCCGTTGCCGGAAGACAACGCGCAGGCGGGTGAGACTCA
GCAGGGTGAACCGTCCCGCCTAAAAACCCGCCTGCGCCGCCGTTACGGTCTGTTCTGGCGCGACAAAGTCCGGCTGCTGA
TGGTGGTGGGTGAACCTGACGAAATCGCCGCATTGGCCCCGCAACTGGCGGAGCAGGGCTGGCTGGAAGGGCAGCGCACG
GTGTTGATACACGGTGGCAGTTTACAACGTCCGGCGGATGAAACCGGGCTGAGTGAGTGGCGCAAACTGCGCCGTGGCCG
CCCGTTGGATGGCATTGTCTGGGCGATGACCGCCGCGCAGAGTGGCACGCCACAGTGGATGGATAACGGCCTGCGAACGC
TGGAAAAAATGGGTGCCGCCTTGCGCTATCAACCGCCGGTGTATCTGTGGCAGGTCTGTGACAGCGACTGGCCTCAGGAT
TCGCGGACGGAGCAGCCGGTCGGGGCGGTGTTCCCGGCGAAGGCTACGCCAGAAAAGGTGGAGCAGCAACTGCGTGCCCT
GTTGCCTCAGTTACGTGAACAGGGAATGCAGCAGCTTTCCATCGAGCCGCACCATGATTTCTTGTTGCGTCTGGCGCAGT
CACTGGATCAGGGCGATGCGGCTCGCTGGCGGCAGCGTCTGACGCCGTGGTTTACCGAGTATGCCGCGCGTATTCCCCTG
CGTGGGCTGATGTTCAGTTTACCCGATACCTCTGCATCGGCGGCGCAGGTACATGAGAAAAGCTGGACGGTGCCAGCCAG
TTGGCAGGGGGTGCTGGATGACTGTCGTTCTGCCCGTGGACGCCGTGTCGGGCTGCCGTGGGAGCAGACACTGTGCTACA
GCTTGCTGGCACTGATTGTCTTGTGGGGTGTGGGCAGCGTGGTGTCATTTGCGGTCAACCGCCACCAGATGGTCTCTGCC
GCGCAGCAGGCACAGCAACTGGCGCAATCGCACGCGGTCTCCGACCAGCAACTGATGGCCCTACAAGCTCTGCGAAATGA
TATCGGGCGCTTACAGGCCCGCGTGGCGCAGGGCGCGCCGTGGTATCAGCGCTTTGGTCTGGATCATAATGCGCCGCTGC
TTGAGGTCCTGATGCCGTGGTATGGCCAGGCCAACAACCGCATTCTCAGAGATACCACCGCGCAGAGCCTGTATCAGAAA
CTCAGCGAACTGGCGGAGCTGCCCGCCAACAGCCCGCAACGGGCAGCACGGGCAAAAACAGGCTATGACCAGTTAAAGGC
TTATCTGATGATGGCCCGCCCGGAAAAAGCCGATGCTGTATTTTATGCTCAGGTGATGCAGACCACCGAGCCTACGCGTG
CCGGTGTCTCCCCCGGTCTGTGGCAGAGTCTGGCGCCCGACTTGTGGCAGTTTTATGCACAAAATCTGCCCGCTCAGCCG
GACTGGAAAATTACCCCGGATACCGGGTTGGTAAGCCAGGTGCGGCAGGTGTTGCTGGGGCAGATGGGTCAGCGCAATGC
AGAAAGTACGCTGTATGAAAACATGCTGCTGTCGGTGCGCCGCAACTATGCCGACATGACGCTGATGGACATGACCGGCG
ATACCGATGCTCAGCGTCTGTTTCAGACCTCGGAATCCGTGCCCGGTATGTTCACCCGCAAGGCCTGGGATGAGCAAATC
CAGCAGGCGATAGATAAAACGGTGGCCTCCCGCCGCGAAGAAATTGACTGGGTATTGAGTGATAACCGCCGGGCGATATC
CGAAGATATCTCACCGGAAGCGCTGAAAAAACGCCTGACCGAACGTTATTTCACCGATTTTGCTGGCAGTTGGCTGAGTT
TCCTCAACAGTTTGCACTGGAATGAGGCGCATAACCTGTCGGATGTGATTGACCAACTGACCTTGATGAGTGATGTACGC
CAGTCGCCGCTGATTGCGCTGATGAACACGCTGGCGTGGCAAGGGCAGACCGGGCAGCAGAATCAGGCATTATCGGATTC
GCTGGTGAAGTCCGCCAAGGCACTGATGAATAAAGACCAGGCTCCGGCGATTGACCAGAGCGCCGGTGGGCCAGTGGGGC
CGCTGGACGAGACCTTTGGCCCGCTGCTGGCACTGATGGGCAAAGGCGATGCACAAAACAGGCTGTCGTCGGACAGCTCG
CTGAGCCTGCAAACGTTGCTCACCCGCGTGACTCGGGTGCGGCTTAAACTCCAGCAGGTGGTCAATGCTTCGGATCCGCA
GGAGATGACACAGGTGCTGGCCCAGACCGTTTTCCAGGGCAAAAGTGTTGATCTGACGGACACGCAGGAGTACGGCAGCC
TGATTGCCGCCAGTCTGGGAGAGGAATGGAGCAGCTTCGGGCAGACGATGTTTGTTCAGCCGCTGACGCAGGCGTGGGAA
ACCGTGCTGCAACCTTCATCGGCCAGTCTCAACGACCAGTGGAAAAACGCGGTGGTGGCCAACTGGAAATCGGCCTTTGA
TGGCCGCTATCCGTTTGCCGCCAGTAAAAGCGATGCCTCACTGCCGATGCTGGCCGAGTTTATCCGCAAGGACAGCGGGC
GCATCGACAGCTTCCTGACCCGTGAACTGGGCGGCGTGCTGCATAAAGAAGGGACGCGCTGGGTACCGAGTAAAGTGAAC
AGTCAGGGGCTGACCTTTAACCCGGCCTTCCTGGCGGCGATTAATCAACTGAGCCAAATCTCCGATATTCTGTTCACTGA
CGGCAGTCAGGGGCTGCGCTTTGAGCTGCTGGCCCGTCCAGTGCCGAACGTGGTGGAAACCCATTTGGCGATTGACGGAC
AGAAATTGCATTATTTCAACCAGATGGAGAGCTGGCAGAGTTTCCGCTGGCCGGGTGAAACCTACAAACCCGGCACCCTG
TTGACCTGGACTGGTGTGAGTTCCGGCGCCCGGTTGTACGGTGATTATCAGGGGACATGGGGGCTGATCCGTTGGCTGGA
GCAGGCAAAACAGAAAAAGCTGGATGAAGGGCGCTATCAACTGACCTTCACCACCGCAGATAAACAGCCATTGCAATGGA
TATTACGCACCGAGCTGGGCAAAGGCCCGTTAGGCCTGTTGCAACTGCGTAATTTCACCCTGCCTGCGCAAATTTTTCTG
ATACAGAATGCGCCGCCCGCGGTCGCTGACATGTCAGACGATGAAGACATGGCAGAAGACTGA